Evidence map›Paper›PMID 29474579›Full record

ArticleNucleic acids research2018

Direct observation of nucleic acid binding dynamics by the telomerase essential N-terminal domain.

Shankar Shastry, Olga Steinberg-Neifach, Neal Lue, Michael D Stone

Abstract read
In one paragraph

Article in Nucleic acids research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
  3. A structurally conserved human andProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  4. Article
  5. Structural Biology of Telomerase.Cold Spring Harbor perspectives in biology · 2019
    Review
  6. Single-Molecule Analysis of Reverse Transcriptase Enzymes.Cold Spring Harbor perspectives in biology · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Shankar ShastryDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, CA 95064, USA.
Olga Steinberg-NeifachDepartment of Microbiology and Immunology, Weill Medical College of Cornell University, New York, NY 10065, USA.
Neal LueDepartment of Microbiology and Immunology, Weill Medical College of Cornell University, New York, NY 10065, USA.
Michael D StoneDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, CA 95064, USA.

Funding

Structure and dynamics of the Tetrahymena telomerase ribonucleoproteinR01GM095850 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI STONE, MICHAEL D · 2011 to 2023
$4.4M
Telomere terminal extension and replication: mechanisms and links to DNA repair - SupplementR01GM107287 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI LUE, NEAL F · 2014 to 2023
$2.9M
Researcher Resilience through Multidimensional MentoringDP4GM096850 · NIGMS · UNIVERSITY OF ROCHESTER · PI LEWIS, VIVIAN · 2010 to 2010
$2.0M
NIGMS NIH HHS DP4 GM096850NIGMS NIH HHS R01 GM095850NIGMS NIH HHS R01 GM107287
6 · The paper itself

Abstract

Telomerase is a specialized enzyme that maintains telomere length by adding DNA repeats to chromosome ends. The catalytic protein subunit of telomerase utilizes the integral telomerase RNA to direct telomere DNA synthesis. The telomerase essential N-terminal (TEN) domain is required for enzyme function; however, the precise mechanism of the TEN domain during catalysis is not known. We report a single-molecule study of dynamic TEN-induced conformational changes in its nucleic acid substrates. The TEN domain from the yeast Candida parapsilosis (Cp) exhibits a strong binding preference for double-stranded nucleic acids, with particularly high affinity for an RNA-DNA hybrid mimicking the template-product complex. Surprisingly, the telomere DNA repeat sequence from C. parapsilosis forms a DNA hairpin that also binds CpTEN with high affinity. Mutations to several residues in a putative nucleic acid-binding patch of CpTEN significantly reduced its affinity to the RNA-DNA hybrid and telomere DNA hairpin. Substitution of comparable residues in the related Candida albicans TEN domain caused telomere maintenance defects in vivo and decreased primer extension activity in vitro. Collectively, our results support a working model in which dynamic interactions with telomere DNA and the template-product hybrid underlie the functional requirement for the TEN domain during the telomerase catalytic cycle.

Indexed as

BiocatalysisCandidaCandida albicansCatalytic DomainDNAFungal ProteinsModels, MolecularNucleic Acid ConformationProtein BindingProtein DomainsSpecies SpecificityTelomeraseTelomereDNAFungal ProteinsTelomerase

Identifiers

PMID29474579
PMCPMC5887506

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.