Evidence map›Paper›PMID 29472539›Full record

ArticleNature communications2018

A regulatory circuit of two lncRNAs and a master regulator directs cell fate in yeast.

Fabien Moretto, N Ezgi Wood, Gavin Kelly, Andreas Doncic, Folkert J van Werven

Abstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
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  17. Article
  18. Sporulation inJournal of fungi (Basel, Switzerland) · 2020
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Fabien MorettoThe Francis Crick Institute, 1 Midland Road, London, NW1 1AT, UK.
N Ezgi WoodDepartment of Cell Biology, UT Southwestern Medical Center, 6000 Harry Hines Boulevard, Dallas, TX, 75390, USA.
Gavin KellyThe Francis Crick Institute, 1 Midland Road, London, NW1 1AT, UK.ORCID http://orcid.org/0000-0001-7219-560X
Andreas DoncicDepartment of Cell Biology, UT Southwestern Medical Center, 6000 Harry Hines Boulevard, Dallas, TX, 75390, USA.
Folkert J van WervenThe Francis Crick Institute, 1 Midland Road, London, NW1 1AT, UK. folkert.vanwerven@crick.ac.uk.

Funding

Cancer Research UK 17576Wellcome Trust
6 · The paper itself

Abstract

Transcription of long noncoding RNAs (lncRNAs) regulates local gene expression in eukaryotes. Many examples of how a single lncRNA controls the expression of an adjacent or nearby protein-coding gene have been described. Here we examine the regulation of a locus consisting of two contiguous lncRNAs and the master regulator for entry into yeast meiosis, IME1. We find that the cluster of two lncRNAs together with several transcription factors form a regulatory circuit by which IME1 controls its own promoter and thereby promotes its own expression. Inhibition or stimulation of this unusual feedback circuit affects timing and rate of IME1 accumulation, and hence the ability for cells to enter meiosis. Our data demonstrate that orchestrated transcription through two contiguous lncRNAs promotes local gene expression and determines a critical cell fate decision.

Indexed as

Gene Expression Regulation, FungalMeiosisPromoter Regions, GeneticRNA, FungalRNA, Long NoncodingSaccharomyces cerevisiaeTranscription, GeneticRNA, FungalRNA, Long Noncoding

Identifiers

PMID29472539
PMCPMC5823921

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.