Evidence map›Paper›PMID 29472314›Full record

ArticleBioscience reports2018

Cysteine modifiers suggest an allosteric inhibitory site on the CAL PDZ domain.

Yu Zhao, Patrick R Cushing, David C Smithson, Maria Pellegrini, Alexandre A Pletnev, Sahar Al-Ayyoubi, Andrew V Grassetti, Scott A Gerber, R Kiplin Guy, Dean R Madden

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Bioscience reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Cell type-specific regulation of CFTR trafficking-on the verge of progress.Frontiers in cell and developmental biology · 2024
    Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Yu ZhaoDepartment of Biochemistry and Cell Biology, Geisel School of Medicine at Dartmouth, Hanover, NH 03755, U.S.A.
Patrick R CushingDepartment of Biochemistry and Cell Biology, Geisel School of Medicine at Dartmouth, Hanover, NH 03755, U.S.A.
David C SmithsonDepartment of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, TN 38105, U.S.A.
Maria PellegriniDepartment of Chemistry, Dartmouth College, Hanover, NH 03755, U.S.A.
Alexandre A PletnevDepartment of Chemistry, Dartmouth College, Hanover, NH 03755, U.S.A.
Sahar Al-AyyoubiDepartment of Biochemistry and Cell Biology, Geisel School of Medicine at Dartmouth, Hanover, NH 03755, U.S.A.
Andrew V GrassettiDepartment of Biochemistry and Cell Biology, Geisel School of Medicine at Dartmouth, Hanover, NH 03755, U.S.A.
Scott A GerberDepartment of Biochemistry and Cell Biology, Geisel School of Medicine at Dartmouth, Hanover, NH 03755, U.S.A.
R Kiplin GuyDepartment of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, TN 38105, U.S.A.
Dean R MaddenDepartment of Biochemistry and Cell Biology, Geisel School of Medicine at Dartmouth, Hanover, NH 03755, U.S.A. drm0001@dartmouth.edu.
University of Kentucky · US

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
Understanding the role of RNA-binding protein mutations in cancerP20GM113132 · NIGMS · DARTMOUTH COLLEGE · PI MADDEN, DEAN R · 2016 to 2025
$25.9M
Life Science and Biomedical technology Research center at NSLS-II LSBRP41GM111244 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI MCSWEENEY, SEAN · 2014 to 2018
$16.4M
Translational Research CoreP30DK117469 · NIDDK · DARTMOUTH COLLEGE · PI DEAN R MADDEN · 2018 to 2026
$13.9M
Molecular and Cellular Biology at DartmouthT32GM008704 · NIGMS · DARTMOUTH COLLEGE · PI COMPTON, DUANE A. · 1998 to 2018
$6.8M
TRANSLATIONAL RESEARCH COREP30GM106394 · NIGMS · DARTMOUTH COLLEGE · PI STANTON, BRUCE A. · 2013 to 2017
$6.1M
Preclinical development of CFTR stabilizers targeting the CAL PDZ domainR01DK101541 · NIDDK · DARTMOUTH COLLEGE · PI MADDEN, DEAN R · 2014 to 2017
$1.9M
Defining human kinase-substrate networks and their dynamic regulationR01GM122846 · NIGMS · DARTMOUTH COLLEGE · PI GERBER, SCOTT A. · 2017 to 2020
$1.5M
Small-Molecule Targeting of CFTR:PDZ Trafficking InteractionsR21NS067613 · NINDS · DARTMOUTH COLLEGE · PI MADDEN, DEAN R · 2009 to 2011
$215k
NIDDK NIH HHS P30 DK117469NIDDK NIH HHS R01 DK101541NIGMS NIH HHS P20 GM113132NIGMS NIH HHS P30 GM106394NIGMS NIH HHS P41 GM103393NIGMS NIH HHS P41 GM111244NIGMS NIH HHS R01 GM122846NIGMS NIH HHS T32 GM008704NINDS NIH HHS R21 NS067613
6 · The paper itself

Abstract

Protein-protein interactions have become attractive targets for both experimental and therapeutic interventions. The PSD-95/Dlg1/ZO-1 (PDZ) domain is found in a large family of eukaryotic scaffold proteins that plays important roles in intracellular trafficking and localization of many target proteins. Here, we seek inhibitors of the PDZ protein that facilitates post-endocytic degradation of the cystic fibrosis (CF) transmembrane conductance regulator (CFTR): the CFTR-associated ligand (CAL). We develop and validate biochemical screens and identify methyl-3,4-dephostatin (MD) and its analog ethyl-3,4-dephostatin (ED) as CAL PDZ inhibitors. Depending on conditions, MD can bind either covalently or non-covalently. Crystallographic and NMR data confirm that MD attacks a pocket at a site distinct from the canonical peptide-binding groove, and suggests an allosteric connection between target residue Cys

Indexed as

Adaptor Proteins, Signal TransducingAllosteric RegulationAllosteric SiteCarrier ProteinsCrystallography, X-RayCysteineGolgi Matrix ProteinsHumansHydroquinonesMembrane ProteinsMembrane Transport ProteinsMethylationMolecular Docking SimulationNuclear Magnetic Resonance, BiomolecularPDZ DomainsAdaptor Proteins, Signal TransducingCarrier ProteinsCysteineethyl-3,4-dephostatinGolgi Matrix ProteinsGOPC protein, humanHydroquinonesMembrane ProteinsMembrane Transport Proteinscovalent allosteryhigh-throughput screenNMR spectroscopyprotein-protein interactionsX-ray crystallography

Identifiers

PMID29472314
PMCPMC6435542
OpenAlexW2843055359

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.