Evidence map›Paper›PMID 29470621›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2018

Novel sources of resistance to Septoria nodorum blotch in the Vavilov wheat collection identified by genome-wide association studies.

Huyen T T Phan, Kasia Rybak, Stefania Bertazzoni, Eiko Furuki, Eric Dinglasan, Lee T Hickey, Richard P Oliver, Kar-Chun Tan

Abstract read
In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

  1. Identification of septoria nodorum blotch susceptibility genes in hard winter wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
    Article
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  4. Article
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  7. Stacking beneficial haplotypes from the Vavilov wheat collection to accelerate breeding for multiple disease resistance.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Article
  8. Article
  9. Identification of WheatPlants (Basel, Switzerland) · 2024
    Article
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  11. Review
  12. Article
  13. Article
  14. Article
  15. Genome-wide association mapping of septoria nodorum blotch resistance in Nordic winter and spring wheat collections.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Huyen T T PhanCentre for Crop and Disease Management, School of Molecular and Life Sciences, Curtin University, Bentley, WA, Australia.
Kasia RybakCentre for Crop and Disease Management, School of Molecular and Life Sciences, Curtin University, Bentley, WA, Australia.
Stefania BertazzoniCentre for Crop and Disease Management, School of Molecular and Life Sciences, Curtin University, Bentley, WA, Australia.
Eiko FurukiCentre for Crop and Disease Management, School of Molecular and Life Sciences, Curtin University, Bentley, WA, Australia.
Eric DinglasanQueensland Alliance for Agriculture and Food Innovation, The University of Queensland, St. Lucia, QLD, Australia.
Lee T HickeyQueensland Alliance for Agriculture and Food Innovation, The University of Queensland, St. Lucia, QLD, Australia.
Richard P OliverCentre for Crop and Disease Management, School of Molecular and Life Sciences, Curtin University, Bentley, WA, Australia.
Kar-Chun TanCentre for Crop and Disease Management, School of Molecular and Life Sciences, Curtin University, Bentley, WA, Australia. Kar-Chun.Tan@curtin.edu.au.ORCID http://orcid.org/0000-0001-6094-823X

Funding

Curtin University of Technology CUR00023Grains Research and Development Corporation CUR00023
6 · The paper itself

Abstract

key messageThe fungus Parastagonospora nodorum causes Septoria nodorum blotch (SNB) of wheat. A genetically diverse wheat panel was used to dissect the complexity of SNB and identify novel sources of resistance. The fungus Parastagonospora nodorum is the causal agent of Septoria nodorum blotch (SNB) of wheat. The pathosystem is mediated by multiple fungal necrotrophic effector-host sensitivity gene interactions that include SnToxA-Tsn1, SnTox1-Snn1, and SnTox3-Snn3. A P. nodorum strain lacking SnToxA, SnTox1, and SnTox3 (toxa13) retained wild-type-like ability to infect some modern wheat cultivars, suggesting evidence of other effector-mediated susceptibility gene interactions or the lack of host resistance genes. To identify genomic regions harbouring such loci, we examined a panel of 295 historic wheat accessions from the N. I. Vavilov Institute of Plant Genetic Resources in Russia, which is comprised of genetically diverse landraces and breeding lines registered from 1920 to 1990. The wheat panel was subjected to effector bioassays, infection with P. nodorum wild type (SN15) and toxa13. In general, SN15 was more virulent than toxa13. Insensitivity to all three effectors contributed significantly to resistance against SN15, but not toxa13. Genome-wide association studies using phenotypes from SN15 infection detected quantitative trait loci (QTL) on chromosomes 1BS (Snn1), 2DS, 5AS, 5BS (Snn3), 3AL, 4AL, 4BS, and 7AS. For toxa13 infection, a QTL was detected on 5AS (similar to SN15), plus two additional QTL on 2DL and 7DL. Analysis of resistance phenotypes indicated that plant breeders may have inadvertently selected for effector insensitivity from 1940 onwards. We identify accessions that can be used to develop bi-parental mapping populations to characterise resistance-associated alleles for subsequent introgression into modern bread wheat to minimise the impact of SNB.

Indexed as

AllelesAscomycotaDisease ResistanceEpistasis, GeneticGenes, PlantGenetic Association StudiesGenetic VariationGenotypeHaplotypesPhenotypePlant DiseasesQuantitative Trait LociTriticum

Identifiers

PMID29470621
PMCPMC5945755

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.