Evidence map›Paper›PMID 29469687›Full record

ArticleThe Journal of general virology2018

Diverse papillomaviruses identified in Weddell seals.

Zoe E Smeele, Jennifer M Burns, Koenraad Van Doorsaler, Rafaela S Fontenele, Kara Waits, Daisy Stainton, Michelle R Shero, Roxanne S Beltran, Amy L Kirkham, Rachel Berngartt and 2 more

Abstract read
In one paragraph

Article in The Journal of general virology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
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  8. Viral metagenomic survey of Caspian seals.Frontiers in veterinary science · 2024
    Article
  9. Article
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  13. Discovery of two novelFrontiers in microbiology · 2022
    Article
  14. Circoviruses and cycloviruses identified in Weddell seal fecal samples from McMurdo Sound, Antarctica.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2021
    Article
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 3 countries.

Zoe E SmeeleThe Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, AZ 85287-5001, USA.
Jennifer M BurnsDepartment of Biological Sciences, University of Alaska Anchorage, 3211 Providence Drive, Anchorage, AK 99508, USA.
Koenraad Van DoorsalerSchool of Animal and Comparative Biomedical Sciences, Cancer Biology Graduate Interdisciplinary Program, Genetics Graduate Interdisciplinary Program, and Bio5, University of Arizona, 1657 E Helen St., Tucson, AZ 85721, USA.
Rafaela S FonteneleThe Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, AZ 85287-5001, USA.
Kara WaitsThe Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, AZ 85287-5001, USA.
Daisy StaintonSchool of Biological Sciences, University of Canterbury, Private Bag 4800, Christchurch, New Zealand.
Michelle R SheroDepartment of Biological Sciences, University of Alaska Anchorage, 3211 Providence Drive, Anchorage, AK 99508, USA.
Roxanne S BeltranDepartment of Biological Sciences, University of Alaska Anchorage, 3211 Providence Drive, Anchorage, AK 99508, USA.
Amy L KirkhamDepartment of Biological Sciences, University of Alaska Anchorage, 3211 Providence Drive, Anchorage, AK 99508, USA.
Rachel BerngarttBridge Veterinary Services, LLC, Juneau, AK 99801, USA.
Simona KrabergerThe Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine, School of Life Sciences, Arizona State University, Tempe, AZ 85287-5001, USA.
Arvind VarsaniSchool of Biological Sciences, University of Canterbury, Private Bag 4800, Christchurch, New Zealand.
Arizona State University · USProvidence College · USUniversity of Canterbury · NZUniversity of Alaska Anchorage · USUniversity of Arizona · US

Funding

The Administrative CoreP20GM103395 · NIGMS · UNIVERSITY OF ALASKA FAIRBANKS · PI BRIAN M BARNES · 2012 to 2026
$66.1M
NIGMS NIH HHS P20 GM103395
6 · The paper itself

Abstract

Papillomaviridae is a diverse family of circular, double-stranded DNA (dsDNA) viruses that infect a broad range of mammalian, avian and fish hosts. While papillomaviruses have been characterized most extensively in humans, the study of non-human papillomaviruses has contributed greatly to our understanding of their pathogenicity and evolution. Using high-throughput sequencing approaches, we identified 7 novel papillomaviruses from vaginal swabs collected from 81 adult female Weddell seals (Leptonychotes weddellii) in the Ross Sea of Antarctica between 2014-2017. These seven papillomavirus genomes were amplified from seven individual seals, and six of the seven genomes represented novel species with distinct evolutionary lineages. This highlights the diversity of papillomaviruses among the relatively small number of Weddell seal samples tested. Viruses associated with large vertebrates are poorly studied in Antarctica, and this study adds information about papillomaviruses associated with Weddell seals and contributes to our understanding of the evolutionary history of papillomaviruses.

Indexed as

Amino Acid SequenceAnimalsAntarctic RegionsFemaleGenetic VariationGenome, ViralMolecular Sequence DataPapillomaviridaePhylogenySeals, EarlessTumor Virus InfectionsVaginaViral ProteinsViral ProteinsAntarcticCarnivoraLeptonychotes weddelliipapillomavirus

Identifiers

PMID29469687
PMCPMC5982131
OpenAlexW2788854680

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.