Evidence map›Paper›PMID 29468803›Full record

ArticleEnvironmental microbiology2018

Gene expression and ultrastructure of meso- and thermophilic methanotrophic consortia.

Viola Krukenberg, Dietmar Riedel, Harald R Gruber-Vodicka, Pier Luigi Buttigieg, Halina E Tegetmeyer, Antje Boetius, Gunter Wegener

Open access · hybridAbstract read
In one paragraph

Article in Environmental microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
9.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 124 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Ethane-oxidising archaea couple CONature communications · 2024
    Article
  10. Article
  11. Article
  12. Structural and mechanistic basis of the central energy-converting methyltransferase complex of methanogenesis.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Viola KrukenbergMax Planck Institute for Marine Microbiology, Bremen, 28359, Germany.ORCID 0000-0001-8369-8114
Dietmar RiedelMax Planck Institute for Biophysical Chemistry, Göttingen, 37077, Germany.
Harald R Gruber-VodickaMax Planck Institute for Marine Microbiology, Bremen, 28359, Germany.
Pier Luigi ButtigiegAlfred Wegener Institute, Helmholtz Center for Polar and Marine Research, Bremerhaven, 27570, Germany.
Halina E TegetmeyerAlfred Wegener Institute, Helmholtz Center for Polar and Marine Research, Bremerhaven, 27570, Germany.
Antje BoetiusMax Planck Institute for Marine Microbiology, Bremen, 28359, Germany.
Gunter WegenerMax Planck Institute for Marine Microbiology, Bremen, 28359, Germany.
Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung · DEMax Planck Institute for Marine Microbiology · DEMax Planck Institute for Biophysical Chemistry · DEUniversity of Bremen · DE

Funding

European Research Council 294757
6 · The paper itself

Abstract

The sulfate-dependent, anaerobic oxidation of methane (AOM) is an important sink for methane in marine environments. It is carried out between anaerobic methanotrophic archaea (ANME) and sulfate-reducing bacteria (SRB) living in syntrophic partnership. In this study, we compared the genomes, gene expression patterns and ultrastructures of three phylogenetically different microbial consortia found in hydrocarbon-rich environments under different temperature regimes: ANME-1a/HotSeep-1 (60°C), ANME-1a/Seep-SRB2 (37°C) and ANME-2c/Seep-SRB2 (20°C). All three ANME encode a reverse methanogenesis pathway: ANME-2c encodes all enzymes, while ANME-1a lacks the gene for N5,N10-methylene tetrahydromethanopterin reductase (mer) and encodes a methylenetetrahydrofolate reductase (Met). The bacterial partners contain the genes encoding the canonical dissimilatory sulfate reduction pathway. During AOM, all three consortia types highly expressed genes encoding for the formation of flagella or type IV pili and/or c-type cytochromes, some predicted to be extracellular. ANME-2c expressed potentially extracellular cytochromes with up to 32 hemes, whereas ANME-1a and SRB expressed less complex cytochromes (≤ 8 and ≤ 12 heme respectively). The intercellular space of all consortia showed nanowire-like structures and heme-rich areas. These features are proposed to enable interspecies electron exchange, hence suggesting that direct electron transfer is a common mechanism to sulfate-dependent AOM, and that both partners synthesize molecules to enable it.

Indexed as

AnaerobiosisArchaeaBacteriaCytochromesElectron TransportGene Expression Regulation, ArchaealGene Expression Regulation, BacterialGeologic SedimentsMethaneMicrobial ConsortiaOxidation-ReductionPhylogenySulfatesCytochromesMethaneSulfates

Identifiers

PMID29468803
PMCPMC5947290
OpenAlexW2793160680

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.