Evidence map›Paper›PMID 29467471›Full record

ArticleScientific reports2018

Network analysis of coronary artery disease risk genes elucidates disease mechanisms and druggable targets.

Harri Lempiäinen, Ingrid Brænne, Tom Michoel, Vinicius Tragante, Baiba Vilne, Tom R Webb, Theodosios Kyriakou, Johannes Eichner, Lingyao Zeng, Christina Willenborg and 17 more

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  15. Network medicine in Cardiovascular Research.Cardiovascular research · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors.

Harri LempiäinenGenedata AG, Basel, Switzerland. harri.lempiainen@genedata.com.
Ingrid BrænneInstitute for Cardiogenetics, Lübeck, Germany.
Tom MichoelDivision of Genetics and Genomics, The Roslin Institute, University of Edinburgh, Edinburgh, United Kingdom.ORCID 0000-0003-4749-4725
Vinicius TraganteDepartment of Cardiology, Division Heart and Lungs, University Medical Center Utrecht, University of Utrecht, Utrecht, The Netherlands.
Baiba VilneDeutsches Herzzentrum München, Klinik für Herz- und Kreislauferkrankungen, Technische Universität München, Munich, Germany.
Tom R WebbDepartment of Cardiovascular Sciences, University of Leicester and NIHR Leicester Biomedical Research Centre, Leicester, United Kingdom.ORCID 0000-0001-5998-8226
Theodosios KyriakouDivision of Cardiovascular Medicine, Radcliffe Department of Medicine, John Radcliffe Hospital, Oxford, United Kingdom.
Johannes EichnerGenedata AG, Basel, Switzerland.
Lingyao ZengDeutsches Herzzentrum München, Klinik für Herz- und Kreislauferkrankungen, Technische Universität München, Munich, Germany.
Christina WillenborgInstitute for Cardiogenetics, Lübeck, Germany.
Oscar FranzenDepartment of Genetics and Genomic Sciences, Icahn Institute for Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, USA.ORCID 0000-0002-7573-0812
Arno RuusaleppClinical Gene Networks AB, Stockholm, Sweden.
Anuj GoelDivision of Cardiovascular Medicine, Radcliffe Department of Medicine, John Radcliffe Hospital, Oxford, United Kingdom.ORCID 0000-0003-2307-4021
Sander W van der LaanLaboratory of Experimental Cardiology, Department of Cardiology, Division Heart and Lungs, University Medical Center Utrecht, University of Utrecht, Utrecht, The Netherlands.ORCID 0000-0001-6888-1404
Claudia BiegertGenedata AG, Basel, Switzerland.
Stephen HambyDepartment of Cardiovascular Sciences, University of Leicester and NIHR Leicester Biomedical Research Centre, Leicester, United Kingdom.
Husain A TalukdarIntegrated Cardio Metabolic Centre, Department of Medicine, Karolinska Institutet, Karolinska Universitetssjukhuset, Huddinge, Sweden.
Hassan Foroughi AslIntegrated Cardio Metabolic Centre, Department of Medicine, Karolinska Institutet, Karolinska Universitetssjukhuset, Huddinge, Sweden.ORCID 0000-0002-6925-9040
CVgenes@target consortium
Gerard PasterkampLaboratory of Experimental Cardiology, Department of Cardiology, Division Heart and Lungs, University Medical Center Utrecht, University of Utrecht, Utrecht, The Netherlands.
Hugh WatkinsDivision of Cardiovascular Medicine, Radcliffe Department of Medicine, John Radcliffe Hospital, Oxford, United Kingdom.
Nilesh J SamaniDepartment of Cardiovascular Sciences, University of Leicester and NIHR Leicester Biomedical Research Centre, Leicester, United Kingdom.
Timo WittenbergerGenedata AG, Basel, Switzerland.ORCID 0000-0002-7158-7887
Jeanette ErdmannInstitute for Cardiogenetics, Lübeck, Germany.ORCID 0000-0002-4486-6231
Heribert SchunkertDeutsches Herzzentrum München, Klinik für Herz- und Kreislauferkrankungen, Technische Universität München, Munich, Germany.
Folkert W AsselbergsDepartment of Cardiology, Division Heart and Lungs, University Medical Center Utrecht, University of Utrecht, Utrecht, The Netherlands.ORCID 0000-0002-1692-8669
Johan L M BjörkegrenClinical Gene Networks AB, Stockholm, Sweden. johan.bjorkegren@mssm.edu.

Funding

Toward Diagnostics and Therapies of Molecular Subcategories of CADR01HL125863 · NHLBI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI BJORKEGREN, JOHAN M · 2015 to 2018
$3.2M
Network-driven drug repurposing approaches to treat coronary artery diseaseR21TR001739 · NCATS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI BJORKEGREN, JOHAN M, GIANNARELLI, CHIARA · 2016 to 2017
$678k
British Heart Foundation SP/16/4/32697NCATS NIH HHS R21 TR001739NHLBI NIH HHS R01 HL125863
6 · The paper itself

Abstract

Genome-wide association studies (GWAS) have identified over two hundred chromosomal loci that modulate risk of coronary artery disease (CAD). The genes affected by variants at these loci are largely unknown and an untapped resource to improve our understanding of CAD pathophysiology and identify potential therapeutic targets. Here, we prioritized 68 genes as the most likely causal genes at genome-wide significant loci identified by GWAS of CAD and examined their regulatory roles in 286 metabolic and vascular tissue gene-protein sub-networks ("modules"). The modules and genes within were scored for CAD druggability potential. The scoring enriched for targets of cardiometabolic drugs currently in clinical use and in-depth analysis of the top-scoring modules validated established and revealed novel target tissues, biological processes, and druggable targets. This study provides an unprecedented resource of tissue-defined gene-protein interactions directly affected by genetic variance in CAD risk loci.

Indexed as

Gene Regulatory NetworksCoronary Artery DiseaseDrug DiscoveryGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansLinkage DisequilibriumMolecular Targeted TherapyPolymorphism, Single NucleotideQuantitative Trait Loci

Identifiers

PMID29467471
PMCPMC5821758

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.