Evidence map›Paper›PMID 29467240›Full record

ArticleDevelopment (Cambridge, England)2018

Identification, isolation and characterization of human LGR5-positive colon adenoma cells.

Michael K Dame, Durga Attili, Shannon D McClintock, Priya H Dedhia, Peter Ouillette, Olaf Hardt, Alana M Chin, Xiang Xue, Julie Laliberte, Erica L Katz and 17 more

Open access · bronzeAbstract read
In one paragraph

Article in Development (Cambridge, England), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
4.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 72 citations in OpenAlex.

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  11. Iron promotes glycolysis to drive colon tumorigenesis.Biochimica et biophysica acta. Molecular basis of disease · 2023
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  14. R-SPONDIN2Developmental cell · 2022
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  15. Article
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  18. Inhibition of colon cancer K-RasFrontiers in pharmacology · 2022
    Article
  19. Review
  20. Membrane Bound Peroxiredoxin-1 Serves as a Biomarker forAntioxidants & redox signaling · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 3 institutions in 2 countries.

Michael K DameDepartment of Internal Medicine, Division of Gastroenterology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.ORCID 0000-0003-3760-1654
Durga AttiliDepartment of Pathology, University of Michigan, Ann Arbor, MI 48109, USA.
Shannon D McClintockDepartment of Pathology, University of Michigan, Ann Arbor, MI 48109, USA.
Priya H DedhiaDepartment of Surgery, University of Michigan, Ann Arbor, MI 48109, USA.
Peter OuilletteDepartment of Pathology, University of Michigan, Ann Arbor, MI 48109, USA.
Olaf HardtMiltenyi Biotec GmbH, Bergisch Gladbach, 51429, Germany.
Alana M ChinDepartment of Cell and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, USA.
Xiang XueDepartment of Molecular and Integrative Physiology, University of Michigan, Ann Arbor, MI 48109, USA.
Julie LaliberteDepartment of Research and Development, Progenity, Inc., Ann Arbor, MI 48109, USA.
Erica L KatzDepartment of Internal Medicine, Division of Gastroenterology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Gina M NewsomeDepartment of Internal Medicine, Division of Gastroenterology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
David R HillDepartment of Internal Medicine, Division of Gastroenterology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Alyssa J MillerDepartment of Internal Medicine, Division of Gastroenterology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Yu-Hwai TsaiDepartment of Internal Medicine, Division of Gastroenterology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
David AgorkuMiltenyi Biotec GmbH, Bergisch Gladbach, 51429, Germany.
Christopher H AltheimDepartment of Cell and Developmental Biology, University of Michigan, Ann Arbor, MI 48109, USA.
Andreas BosioMiltenyi Biotec GmbH, Bergisch Gladbach, 51429, Germany.
Becky SimonBioCentury Publications, Redwood City, CA 94065, USA.
Linda C SamuelsonDepartment of Internal Medicine, Division of Gastroenterology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Jay A StoerkerDepartment of Research and Development, Progenity, Inc., Ann Arbor, MI 48109, USA.
Henry D AppelmanDepartment of Pathology, University of Michigan, Ann Arbor, MI 48109, USA.
James VaraniDepartment of Pathology, University of Michigan, Ann Arbor, MI 48109, USA.
Max S WichaDepartment of Internal Medicine, Comprehensive Cancer Center, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Dean E BrennerDepartment of Internal Medicine, Comprehensive Cancer Center, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Yatrik M ShahDepartment of Internal Medicine, Division of Gastroenterology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Jason R SpenceDepartment of Internal Medicine, Division of Gastroenterology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.ORCID 0000-0001-7869-3992
Justin A ColacinoDepartment of Environmental Health Sciences, University of Michigan School of Public Health, Ann Arbor, MI 48109, USA colacino@umich.edu.ORCID 0000-0002-5882-4569
University of Michigan · USMiltenyi Biotec (Germany) · DEProgenity (United States) · US

Funding

XenograftP30CA046592 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Alexey I Nesvizhskii · 1988 to 2026
$178.2M
University of Michigan Center for Gastrointestinal ResearchP30DK034933 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI OMARY, BISHR · 1986 to 2021
$22.5M
Strategic Vision & Impact on Environmental HealthP30ES017885 · NIEHS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Dana Dolinoy · 2011 to 2026
$21.3M
Tissue Engineering and RegenerationT32DE007057 · NIDCR · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI DAVID H. KOHN · 1985 to 2026
$17.3M
LABORATORY OF DEVELOPMENTAL BIOLOGYR24HD000836 · NICHD · UNIVERSITY OF WASHINGTON · PI Ian Amos Glass · 1995 to 2026
$16.9M
CELLULAR AND MOLECULAR BIOLOGY AT MICHIGANT32GM007315 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PUTHENVEEDU, MANOJKUMAR A · 1985 to 2021
$12.8M
Translational Research in GI CancerP50CA130810 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BRENNER, DEAN E. · 2010 to 2016
$11.8M
TRAINING PROGRAM IN ORGANOGENESIST32HD007505 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PASCA DI MAGLIANO, MARINA, SPENCE, JASON · 1997 to 2021
$6.9M
Intestinal Stem Cell Consortium Coordinating CenterU01DK085532 · NIDDK · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI NILAND, JOYCE CAROL · 2009 to 2018
$6.5M
Stem Cell Differentiation CoreU19AI116482 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI TAKAYAMA, SHUICHI · 2015 to 2019
$6.4M
Control of iron absorption by intestinal HIF2 in iron and hematological disordersR01DK095201 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SHAH, YATRIK M · 2012 to 2025
$5.7M
Catalysis by Prostaglandin Endoperoxide H SynthasesR01GM068848 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SMITH, WILLIAM L · 2003 to 2014
$5.6M
NCI NIH HHS P30 CA046592NCI NIH HHS P50 CA130810NCI NIH HHS R01 CA148828NCI NIH HHS R21 CA181855NCI NIH HHS R21 CA201782NIAID NIH HHS U19 AI116482NICHD NIH HHS R24 HD000836NICHD NIH HHS T32 HD007505NIDCR NIH HHS T32 DE007057NIDDK NIH HHS P30 DK034933NIDDK NIH HHS R01 DK095201NIDDK NIH HHS U01 DK085532NIDDK NIH HHS U01 DK103141NIDDK NIH HHS U24 DK085532NIEHS NIH HHS P30 ES017885NIEHS NIH HHS R01 ES028802NIGMS NIH HHS R01 GM068848NIGMS NIH HHS T32 GM007315
6 · The paper itself

Abstract

The intestine is maintained by stem cells located at the base of crypts and distinguished by the expression of LGR5. Genetically engineered mouse models have provided a wealth of information about intestinal stem cells, whereas less is known about human intestinal stem cells owing to difficulty detecting and isolating these cells. We established an organoid repository from patient-derived adenomas, adenocarcinomas and normal colon, which we analyzed for variants in 71 colorectal cancer (CRC)-associated genes. Normal and neoplastic colon tissue organoids were analyzed by immunohistochemistry and fluorescent-activated cell sorting for LGR5. LGR5-positive cells were isolated from four adenoma organoid lines and were subjected to RNA sequencing. We found that LGR5 expression in the epithelium and stroma was associated with tumor stage, and by integrating functional experiments with LGR5-sorted cell RNA sequencing data from adenoma and normal organoids, we found correlations between LGR5 and CRC-specific genes, including dickkopf WNT signaling pathway inhibitor 4 (

Indexed as

AdenomaCell Line, TumorColonColonic NeoplasmsFlow CytometryHigh-Throughput Nucleotide SequencingHumansImmunohistochemistryIntestinal MucosaOrganoidsReceptors, G-Protein-CoupledSignal TransductionLGR5 protein, humanReceptors, G-Protein-CoupledOLFM4OrganoidSMOC2Stem cellStromaWnt signaling

Identifiers

PMID29467240
PMCPMC5897593
OpenAlexW2950851832

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.