Evidence map›Paper›PMID 29466914›Full record

ArticleCell cycle (Georgetown, Tex.)2018

Inducible CRISPR genome editing platform in naive human embryonic stem cells reveals JARID2 function in self-renewal.

Amy Ferreccio, Julie Mathieu, Damien Detraux, Logeshwaran Somasundaram, Christopher Cavanaugh, Bryce Sopher, Karin Fischer, Thomas Bello, Abdiasis M Hussein, Shiri Levy and 11 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell cycle (Georgetown, Tex.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it, 16 citations in OpenAlex.

  1. Pooled it
  2. Article
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  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Review
  10. microRNAs Regulating Human and Mouse Naïve Pluripotency.International journal of molecular sciences · 2019
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 2 institutions in 2 countries.

Amy Ferreccioa Department of Biochemistry , University of Washington , Seattle , Washington 98195 , USA.
Julie Mathieua Department of Biochemistry , University of Washington , Seattle , Washington 98195 , USA.
Damien Detrauxa Department of Biochemistry , University of Washington , Seattle , Washington 98195 , USA.ORCID 0000-0003-1924-8156
Logeshwaran Somasundarama Department of Biochemistry , University of Washington , Seattle , Washington 98195 , USA.ORCID 0000-0003-1924-8156
Christopher Cavanaughb Institute for Stem Cell and Regenerative Medicine , University of Washington , Seattle , Washington 98109 , USA.ORCID 0000-0003-3230-0422
Bryce Sopherd Department of Neurobiology , University of Washington , Seattle , WA 98109 , USA.
Karin Fischera Department of Biochemistry , University of Washington , Seattle , Washington 98195 , USA.ORCID 0000-0003-3110-7938
Thomas Bellob Institute for Stem Cell and Regenerative Medicine , University of Washington , Seattle , Washington 98109 , USA.ORCID 0000-0003-3110-7938
Abdiasis M Husseina Department of Biochemistry , University of Washington , Seattle , Washington 98195 , USA.
Shiri Levya Department of Biochemistry , University of Washington , Seattle , Washington 98195 , USA.
Savannah Cookb Institute for Stem Cell and Regenerative Medicine , University of Washington , Seattle , Washington 98109 , USA.
Sonia B Sidhua Department of Biochemistry , University of Washington , Seattle , Washington 98195 , USA.ORCID 0000-0003-3902-9217
Filippo Artonia Department of Biochemistry , University of Washington , Seattle , Washington 98195 , USA.ORCID 0000-0003-3902-9217
Nathan J Palpantb Institute for Stem Cell and Regenerative Medicine , University of Washington , Seattle , Washington 98109 , USA.
Hans Reineckeb Institute for Stem Cell and Regenerative Medicine , University of Washington , Seattle , Washington 98109 , USA.
Yuliang Wangb Institute for Stem Cell and Regenerative Medicine , University of Washington , Seattle , Washington 98109 , USA.
Patrick Paddisonb Institute for Stem Cell and Regenerative Medicine , University of Washington , Seattle , Washington 98109 , USA.
Charles Murryb Institute for Stem Cell and Regenerative Medicine , University of Washington , Seattle , Washington 98109 , USA.ORCID 0000-0003-3862-6773
Suman Jayadevd Department of Neurobiology , University of Washington , Seattle , WA 98109 , USA.
Carol Wareb Institute for Stem Cell and Regenerative Medicine , University of Washington , Seattle , Washington 98109 , USA.ORCID 0000-0002-7171-6685
Hannele Ruohola-Bakera Department of Biochemistry , University of Washington , Seattle , Washington 98195 , USA.ORCID 0000-0002-5588-4531
University of Washington · USThe University of Queensland · AU

Funding

Vector and Transgenic Mouse CoreP30DK017047 · NIDDK · UNIVERSITY OF WASHINGTON · PI Sakeneh Zraika · 1986 to 2026
$41.4M
Progenitor Cell Biology Consortium Administrative Coordinating CenterU01HL099997 · NHLBI · UNIVERSITY OF MARYLAND BALTIMORE · PI TERRIN, MICHAEL L · 2009 to 2015
$29.9M
Self Renewal and Differentiation of Human Embryonic Stem CellsP01GM081619 · NIGMS · UNIVERSITY OF WASHINGTON · PI RUOHOLA-BAKER, HANNELE · 2007 to 2017
$20.6M
Interdisciplinary Tranining in Cancer ResearchT32CA080416 · NCI · UNIVERSITY OF WASHINGTON · PI STODDARD, BARRY L. · 1998 to 2023
$9.7M
MicroRNA Function in Human Embryonic Stem CellsR01GM083867 · NIGMS · UNIVERSITY OF WASHINGTON · PI RUOHOLA-BAKER, HANNELE · 2008 to 2011
$1.5M
Acquisition of Embryonic Stem Cell Metabolic Signature - Minority SupplementR01GM097372 · NIGMS · UNIVERSITY OF WASHINGTON · PI RUOHOLA-BAKER, HANNELE · 2011 to 2014
$1.3M
Employing Familial AD Induced Pluripotent Stem Cells to Study NeurodegenerationK02AG044473 · NIA · UNIVERSITY OF WASHINGTON · PI JAYADEV, SUMAN · 2013 to 2017
$711k
NCI NIH HHS T32 CA080416NHLBI NIH HHS U01 HL099997NIA NIH HHS K02 AG044473NIDDK NIH HHS P30 DK017047NIGMS NIH HHS P01 GM081619NIGMS NIH HHS R01 GM083867NIGMS NIH HHS R01 GM097372
6 · The paper itself

Abstract

To easily edit the genome of naïve human embryonic stem cells (hESC), we introduced a dual cassette encoding an inducible Cas9 into the AAVS1 site of naïve hESC (iCas9). The iCas9 line retained karyotypic stability, expression of pluripotency markers, differentiation potential, and stability in 5iLA and EPS pluripotency conditions. The iCas9 line induced efficient homology-directed repair (HDR) and non-homologous end joining (NHEJ) based mutations through CRISPR-Cas9 system. We utilized the iCas9 line to study the epigenetic regulator, PRC2 in early human pluripotency. The PRC2 requirement distinguishes between early pluripotency stages, however, what regulates PRC2 activity in these stages is not understood. We show reduced H3K27me3 and pluripotency markers in JARID2 2iL-I-F hESC mutants, indicating JARID2 requirement in maintenance of hESC 2iL-I-F state. These data suggest that JARID2 regulates PRC2 in 2iL-I-F state and the lack of PRC2 function in 5iLA state may be due to lack of sufficient JARID2 protein.

Indexed as

Gene EditingBlastocystCell Self RenewalCRISPR-Cas SystemsDNA End-Joining RepairGenetic LociHistonesHuman Embryonic Stem CellsHumansINDEL MutationMicroscopy, ConfocalPhenotypePolycomb Repressive Complex 2Presenilin-2Protein DomainsHistonesJARID2 protein, humanPolycomb Repressive Complex 2Presenilin-2PSEN2 protein, humanCRISPR-Cas9epigeneticsgenome editingHuman embryonic stem cellsJARID2naïve hESCPRC2PSEN2

Identifiers

PMID29466914
PMCPMC5969550
OpenAlexW2790014923

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.