Evidence map›Paper›PMID 29466745›Full record

ArticleCell reports2018

Massively Parallel Single Nucleus Transcriptional Profiling Defines Spinal Cord Neurons and Their Activity during Behavior.

Anupama Sathyamurthy, Kory R Johnson, Kaya J E Matson, Courtney I Dobrott, Li Li, Anna R Ryba, Tzipporah B Bergman, Michael C Kelly, Matthew W Kelley, Ariel J Levine

Abstract read
In one paragraph

Article in Cell reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 226 papers.

0numbers the graph read from it
0cells of the map it votes in
226citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

226 citing papers in PubMed.

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  14. Post-Critical Period Transcriptional and Physiological Adaptations of Primary Sensory Cortex after Sensory Loss.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2026
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166 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Anupama SathyamurthySpinal Circuits and Plasticity Unit, National Institute of Neurological Disorders and Stroke, Bethesda, MD 20892, USA.
Kory R JohnsonBioinformatics Section, Information Technology Program, National Institute of Neurological Disorders and Stroke, Bethesda, MD 20892, USA.
Kaya J E MatsonSpinal Circuits and Plasticity Unit, National Institute of Neurological Disorders and Stroke, Bethesda, MD 20892, USA.
Courtney I DobrottSpinal Circuits and Plasticity Unit, National Institute of Neurological Disorders and Stroke, Bethesda, MD 20892, USA.
Li LiSpinal Circuits and Plasticity Unit, National Institute of Neurological Disorders and Stroke, Bethesda, MD 20892, USA.
Anna R RybaSpinal Circuits and Plasticity Unit, National Institute of Neurological Disorders and Stroke, Bethesda, MD 20892, USA.
Tzipporah B BergmanSpinal Circuits and Plasticity Unit, National Institute of Neurological Disorders and Stroke, Bethesda, MD 20892, USA.
Michael C KellyLaboratory of Cochlear Development, National Institute on Deafness and Other Communication Disorders, Bethesda, MD 20892, USA.
Matthew W KelleyLaboratory of Cochlear Development, National Institute on Deafness and Other Communication Disorders, Bethesda, MD 20892, USA.
Ariel J LevineSpinal Circuits and Plasticity Unit, National Institute of Neurological Disorders and Stroke, Bethesda, MD 20892, USA. Electronic address: ariel.levine@nih.gov.

Funding

Hair Cell Development in the Mammalian CochleaZIADC000059 · NIDCD · NATIONAL INSTITUTE ON DEAFNESS AND OTHER COMMUNICATION DISORDERS · PI KELLEY, MATTHEW · 2009 to 2025
$41.8M
Research Resource for Human Organs and Tissues (U42)U42OD011158 · OD · NATIONAL DISEASE RESEARCH INTERCHANGE · PI BELL, THOMAS J · 2012 to 2025
$25.0M
Mechanisms of Plasticity in the Spinal CordZIANS003153 · NINDS · NATIONAL INSTITUTE OF NEUROLOGICAL DISORDERS AND STROKE · PI LEVINE, ARIEL · 2016 to 2025
$20.9M
Intramural NIH HHS ZIA NS003153NIH HHS U42 OD011158
6 · The paper itself

Abstract

To understand the cellular basis of behavior, it is necessary to know the cell types that exist in the nervous system and their contributions to function. Spinal networks are essential for sensory processing and motor behavior and provide a powerful system for identifying the cellular correlates of behavior. Here, we used massively parallel single nucleus RNA sequencing (snRNA-seq) to create an atlas of the adult mouse lumbar spinal cord. We identified and molecularly characterized 43 neuronal populations. Next, we leveraged the snRNA-seq approach to provide unbiased identification of neuronal populations that were active following a sensory and a motor behavior, using a transcriptional signature of neuronal activity. This approach can be used in the future to link single nucleus gene expression data with dynamic biological responses to behavior, injury, and disease.

Indexed as

Behavior, AnimalAnimalsCell NucleusFemaleGene Expression ProfilingGene Expression RegulationHigh-Throughput Nucleotide SequencingMaleMice, Inbred ICRNeuronsSequence Analysis, RNASpinal Cordneuronal activitysingle cell RNA-seqsnRNA-seqspinal cord

Identifiers

PMID29466745
PMCPMC5849084

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.