Evidence map›Paper›PMID 29466736›Full record

ArticleCell reports2018

Transcriptional Repressor HIC1 Contributes to Suppressive Function of Human Induced Regulatory T Cells.

Ubaid Ullah, Syed Bilal Ahmad Andrabi, Subhash Kumar Tripathi, Obaiah Dirasantha, Kartiek Kanduri, Sini Rautio, Catharina C Gross, Sari Lehtimäki, Kanchan Bala, Johanna Tuomisto and 7 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed, 1 pooled it
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 1 synthesis or guideline pooled it, 71 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
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  5. Article
  6. Article
  7. Article
  8. Article
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  11. Article
  12. Long noncoding RNA LIRIL2R modulates FOXP3 levels and suppressive function of human CD4Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  13. Review
  14. Article
  15. Article
  16. Insights into phenotypic and functional CD8Immunological reviews · 2023
    Review
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 1 country.

Ubaid UllahTurku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland.
Syed Bilal Ahmad AndrabiTurku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland.
Subhash Kumar TripathiTurku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland.
Obaiah DirasanthaTurku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland.
Kartiek KanduriTurku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland; Department of Computer Science, Aalto University School of Science, Aalto, Finland.
Sini RautioDepartment of Computer Science, Aalto University School of Science, Aalto, Finland.
Catharina C GrossDepartment of Neurology, University of Muenster, Albert-Schweitzer-Campus 1, Building A1, 48149 Muenster, Germany.
Sari LehtimäkiTurku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland.
Kanchan BalaTurku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland.
Johanna TuomistoTurku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland.
Urvashi BhatiaDepartment of Neurology, University of Muenster, Albert-Schweitzer-Campus 1, Building A1, 48149 Muenster, Germany.
Deepankar ChakrobortyTurku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland.
Laura L EloTurku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland.
Harri LähdesmäkiTurku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland; Department of Computer Science, Aalto University School of Science, Aalto, Finland.
Heinz WiendlDepartment of Neurology, University of Muenster, Albert-Schweitzer-Campus 1, Building A1, 48149 Muenster, Germany.
Omid RasoolTurku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland.
Riitta LahesmaaTurku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland. Electronic address: rilahes@utu.fi.
Åbo Akademi University · FIUniversity of Turku · FIAalto University · FITurku Centre for Biotechnology · FI

Funding

European Research Council 677943
6 · The paper itself

Abstract

Regulatory T (Treg) cells are critical in regulating the immune response. In vitro induced Treg (iTreg) cells have significant potential in clinical medicine. However, applying iTreg cells as therapeutics is complicated by the poor stability of human iTreg cells and their variable suppressive activity. Therefore, it is important to understand the molecular mechanisms of human iTreg cell specification. We identified hypermethylated in cancer 1 (HIC1) as a transcription factor upregulated early during the differentiation of human iTreg cells. Although FOXP3 expression was unaffected, HIC1 deficiency led to a considerable loss of suppression by iTreg cells with a concomitant increase in the expression of effector T cell associated genes. SNPs linked to several immune-mediated disorders were enriched around HIC1 binding sites, and in vitro binding assays indicated that these SNPs may alter the binding of HIC1. Our results suggest that HIC1 is an important contributor to iTreg cell development and function.

Indexed as

Transcription, GeneticAutoimmune DiseasesBinding SitesCell DifferentiationCell LineageDNAGene Expression ProfilingGenome, HumanHumansKruppel-Like Transcription FactorsPolymorphism, Single NucleotideProtein BindingRepressor ProteinsSequence Analysis, RNAT-Lymphocytes, RegulatoryTranscriptomeDNAHIC1 protein, humanKruppel-Like Transcription FactorsRepressor ProteinsChIP-seqexpression kineticsFOXP3HIC1iTregregulatory SNPRNA-seqsuppressionT cellstranscriptional regulation

Identifiers

PMID29466736
PMCPMC5842026
OpenAlexW2787958089

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.