Evidence map›Paper›PMID 29464485›Full record

ArticleThe protein journal2018

Determining the Roles of a Conserved α-Helix in a Global Virulence Regulator from Staphylococcus aureus.

Avisek Mahapa, Sukhendu Mandal, Debabrata Sinha, Subrata Sau, Keya Sau

Abstract read
PubMed Publisher
In one paragraph

Article in The protein journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Avisek MahapaDepartment of Biotechnology, Haldia Institute of Technology, PO-HIT, Dist-Purba, Medinipur, 721657, West Bengal, India.
Sukhendu MandalDepartment of Biochemistry, Bose Institute, Kolkata, West Bengal, India.
Debabrata SinhaDepartment of Biochemistry, Bose Institute, Kolkata, West Bengal, India.
Subrata SauDepartment of Biochemistry, Bose Institute, Kolkata, West Bengal, India. subratasau@gmail.com.
Keya SauDepartment of Biotechnology, Haldia Institute of Technology, PO-HIT, Dist-Purba, Medinipur, 721657, West Bengal, India. keya_sau@yahoo.co.in.
Bose Institute · INHaldia Institute of Technology · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

SarA, a pleiotropic transcription regulator, is encoded by Staphylococcus aureus, a pathogenic bacterium. The expression of many virulence and non-virulence genes in S. aureus is modulated by this regulator. Structural studies have shown it to be a winged-helix DNA-binding protein carrying two monomers. Each SarA monomer is composed of five α-helices (α1-α5), three β-strands (β1-β3) and multiple loops. The putative DNA binding region of SarA is constituted with α3, α4, β2, and β3, whereas, its dimerization seems to occur using α1, α2, and α5. Interestingly, many SarA-like proteins are dimeric and use three or more helices for their dimerization. To clearly understand the roles of helix α1 in the dimerization, we have constructed and purified a SarA mutant (Δα1) that lacks helix α1. Our in-depth studies with Δα1 indicate that the helix α1 is critical for preserving the structure, DNA binding activity and thermodynamic stability of SarA. However, the helix has little affected its dimerization ability. Possible reasons for such anomaly have been discussed at length.

Indexed as

Bacterial ProteinsStaphylococcus aureusDimerizationDNA-Binding ProteinsProtein Conformation, alpha-HelicalSequence DeletionVirulenceBacterial ProteinsDNA-Binding ProteinsSarA protein, Staphylococcus aureusDeletion mutationDimerizationDNA binding activitySarA, helix α1Staphylococcus aureus

Identifiers

PMID29464485
OpenAlexW2793176582

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.