Evidence map›Paper›PMID 29464419›Full record

ArticlePharmaceutical research2018

Light-Induced Covalent Buffer Adducts to Histidine in a Model Protein.

Ming Lei, Cynthia Quan, Y John Wang, Yung-Hsiang Kao, Christian Schöneich

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Article in Pharmaceutical research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Ming LeiProtein Analytical Chemistry, Genentech, Inc., 1 DNA Way, South San Francisco, California, 94080, USA. lei.ming@gene.com.ORCID http://orcid.org/0000-0002-1247-1358
Cynthia QuanProtein Analytical Chemistry, Genentech, Inc., 1 DNA Way, South San Francisco, California, 94080, USA.
Y John WangLate Stage Pharmaceutical Development, Genentech, Inc., 1 DNA Way, South San Francisco, California, 94080, USA.
Yung-Hsiang KaoProtein Analytical Chemistry, Genentech, Inc., 1 DNA Way, South San Francisco, California, 94080, USA.
Christian SchöneichDepartment of Pharmaceutical Chemistry, University of Kansas, 2095 Constant Avenue, Lawrence, Kansas, 66047, USA. schoneic@ku.edu.
Gene Therapy Laboratory · FRPharmaceutical Product Development (United States) · USUniversity of Kansas · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeLight is known to induce histidine (His) oxidation and His-His crosslinking in proteins. The crosslinking is resulted from the nucleophilic attack of a His to a photooxidized His from another protein. The goal of this work is to understand if covalent buffer adducts on His residues can be generated by light through similar mechanisms in nucleophilic buffers such as Tris and His.

methodsA model protein (DNase) was buffer exchanged into nucleophilic buffers before light exposure. Photogenerated products were characterized by tryptic peptide mapping with mass spectrometry (MS) analysis. Several buffer adductions on His residues were identified after light exposure. To understand the influencing factors of such reactions, the levels of adducts were measured for six nucleophilic buffers on all His residues in DNase.

resultsThe levels of adducts were found to correlate with the solvent accessibility of the His residue. The levels of adducts also correlate with the structure of the nucleophile, especially the steric restrictions of the nucleophile. The levels of adducts can be higher than that of other His photoreaction products, including photooxidation and crosslinking.

conclusionsIn nucleophilic buffers, light can induce covalently-linked adducts to His residues.

Indexed as

Cross-Linking ReagentsDeoxyribonucleasesHistidineLightOxidation-ReductionProtein DenaturationTromethamineCross-Linking ReagentsDeoxyribonucleasesHistidineTromethaminehistidinelightoxidationsinglet oxygen

Identifiers

PMID29464419
OpenAlexW2794073903

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.