Evidence map›Paper›PMID 29464023›Full record

ArticleOncotarget2018

Interferon sensitivity-determining region of hepatitis C virus influences virus production and interferon signaling.

Ryuichi Sugiyama, Asako Murayama, Sayuri Nitta, Norie Yamada, Megumi Tasaka-Fujita, Takahiro Masaki, Hussein Hassan Aly, Masaaki Shiina, Akihide Ryo, Koji Ishii and 2 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Ryuichi SugiyamaDepartment of Virology II, National Institute of Infectious Diseases, Tokyo, Japan.
Asako MurayamaDepartment of Virology II, National Institute of Infectious Diseases, Tokyo, Japan.
Sayuri NittaDepartment of Virology II, National Institute of Infectious Diseases, Tokyo, Japan.
Norie YamadaDepartment of Virology II, National Institute of Infectious Diseases, Tokyo, Japan.
Megumi Tasaka-FujitaDepartment of Virology II, National Institute of Infectious Diseases, Tokyo, Japan.
Takahiro MasakiDepartment of Virology II, National Institute of Infectious Diseases, Tokyo, Japan.
Hussein Hassan AlyDepartment of Virology II, National Institute of Infectious Diseases, Tokyo, Japan.
Masaaki ShiinaDepartment of Virology II, National Institute of Infectious Diseases, Tokyo, Japan.
Akihide RyoDepartment of Microbiology, Yokohama City University School of Medicine, Yokohama, Japan.
Koji IshiiDepartment of Virology II, National Institute of Infectious Diseases, Tokyo, Japan.
Takaji WakitaDepartment of Virology II, National Institute of Infectious Diseases, Tokyo, Japan.
Takanobu KatoDepartment of Virology II, National Institute of Infectious Diseases, Tokyo, Japan.
National Institute of Infectious Diseases · JPJikei University School of Medicine · JPYokohama City University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The number of amino acid substitutions in the interferon (IFN) sensitivity-determining region (ISDR) of hepatitis C virus (HCV) NS5A is a strong predictor for the outcome of IFN-based treatment. To assess the involvement of ISDR in the HCV life cycle and to clarify the molecular mechanisms influencing IFN susceptibility, we used recombinant JFH-1 viruses with NS5A of the genotype 1b Con1 strain (JFH1/5ACon1) and with NS5A ISDR containing 7 amino acid substitutions (JFH1/5ACon1/i-7mut), and compared the virus propagation and the induction of interferon-stimulated genes (ISGs). By transfecting RNAs of these strains into HuH-7-derived cells, we found that the efficiency of infectious virus production of JFH1/5ACon1/i-7mut was attenuated compared with JFH1/5ACon1. After transfecting full-length HCV RNA into HepaRG cells, the mRNA expression of ISGs was sufficiently induced by IFN treatment in JFH1/5ACon1/i-7mut-transfected but not in JFH1/5ACon1-transfected cells. These data suggested that the NS5A-mediated inhibition of ISG induction was deteriorated by amino acid substitutions in the ISDR. In conclusion, using recombinant JFH-1 viruses, we demonstrated that HCV NS5A is associated with infectious virus production and the inhibition of IFN signaling, and amino acid substitutions in the NS5A ISDR deteriorate these functions. These observations explain the strain-specific evasion of IFN signaling by HCV.

Indexed as

cell culturedrug resistanceHCVIFNImmunologyinnate immunity

Identifiers

PMID29464023
PMCPMC5814163
OpenAlexW2779324484

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.