Evidence map›Paper›PMID 29463713›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Substrate binding to BamD triggers a conformational change in BamA to control membrane insertion.

James Lee, Holly A Sutterlin, Joseph S Wzorek, Michael D Mandler, Christine L Hagan, Marcin Grabowicz, David Tomasek, Mary D May, Elizabeth M Hart, Thomas J Silhavy and 1 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed.

  1. The mycomembrane proteins PorH and ProtX are inserted at polar growth zones and linked to the cell wall.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. A mechanism for substrate quality control in outer membrane protein assembly.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Review
  5. Article
  6. A fluorescent reporter and single-turnover kinetics reveal insight into BAM complex function.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Article
  8. Article
  9. Review
  10. Native β-barrel substrates pass through two shared intermediates during folding on the BAM complex.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Review
  16. Cracking outer membrane biogenesis.Biochimica et biophysica acta. Molecular cell research · 2023
    Article
  17. Article
  18. Article
  19. The sacrificial adaptor protein Skp functions to remove stalled substrates from the β-barrel assembly machine.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

James LeeDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138.
Holly A SutterlinDepartment of Molecular Biology, Princeton University, Princeton, NJ 08544.
Joseph S WzorekDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138.
Michael D MandlerDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138.
Christine L HaganDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138.
Marcin GrabowiczDepartment of Molecular Biology, Princeton University, Princeton, NJ 08544.
David TomasekDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138.
Mary D MayDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138.
Elizabeth M HartDepartment of Molecular Biology, Princeton University, Princeton, NJ 08544.
Thomas J SilhavyDepartment of Molecular Biology, Princeton University, Princeton, NJ 08544; tsilhavy@princeton.edu kahne@chemistry.harvard.edu.
Daniel KahneDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138; tsilhavy@princeton.edu kahne@chemistry.harvard.edu.

Funding

PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM007388 · NIGMS · PRINCETON UNIVERSITY · PI CRISTEA, ILEANA M. · 1985 to 2022
$27.4M
Outer Membrane Biogenesis: New Antibiotic TargetsR01AI081059 · NIAID · HARVARD UNIVERSITY · PI Daniel Kahne · 2009 to 2026
$9.5M
Biogenesis and maintenance of the outer membrane of Gram-negative bacteriaR35GM118024 · NIGMS · PRINCETON UNIVERSITY · PI SILHAVY, THOMAS J. · 2016 to 2025
$8.1M
GENETIC ANALYSIS OF PROTEIN EXPORTR37GM034821 · NIGMS · PRINCETON UNIVERSITY · PI SILHAVY, THOMAS J. · 1999 to 2008
$4.9M
GENETIC ANALYSIS OF PROTEIN EXPORTR01GM034821 · NIGMS · PRINCETON UNIVERSITY · PI SILHAVY, THOMAS J. · 1985 to 2015
$4.7M
Investigating the mycomembrane protein assembly pathwayK99AI190054 · NIAID · HARVARD MEDICAL SCHOOL · PI Elizabeth Mary Hart · 2025 to 2026
$227k
Substrate Recognition by the Bam ComplexF32GM108258 · NIGMS · HARVARD UNIVERSITY · PI WZOREK, JOSEPH · 2014 to 2015
$106k
Mapping the pathway of membrane β-barrel protein folding by the Bam complex.F31GM116210 · NIGMS · HARVARD UNIVERSITY · PI LEE, JAMES · 2016 to 2017
$63k
NIAID NIH HHS K99 AI190054NIAID NIH HHS R01 AI081059NIGMS NIH HHS F31 GM116210NIGMS NIH HHS F32 GM108258NIGMS NIH HHS R01 GM034821NIGMS NIH HHS R35 GM118024NIGMS NIH HHS R37 GM034821NIGMS NIH HHS T32 GM007388
6 · The paper itself

Abstract

The β-barrel assembly machine (Bam) complex folds and inserts integral membrane proteins into the outer membrane of Gram-negative bacteria. The two essential components of the complex, BamA and BamD, both interact with substrates, but how the two coordinate with each other during assembly is not clear. To elucidate aspects of this process we slowed the assembly of an essential β-barrel substrate of the Bam complex, LptD, by changing a conserved residue near the C terminus. This defective substrate is recruited to the Bam complex via BamD but is unable to integrate into the membrane efficiently. Changes in the extracellular loops of BamA partially restore assembly kinetics, implying that BamA fails to engage this defective substrate. We conclude that substrate binding to BamD activates BamA by regulating extracellular loop interactions for folding and membrane integration.

Indexed as

Bacterial Outer Membrane ProteinsEscherichia coli ProteinsKineticsModels, MolecularPeriplasmProtein BindingProtein ConformationProtein FoldingBacterial Outer Membrane ProteinsEscherichia coli ProteinsBam complexbeta-barrelouter membraneprotein folding

Identifiers

PMID29463713
PMCPMC5877925

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.