Evidence map›Paper›PMID 29463659›Full record

ArticlemBio2018

A Near-Complete Haplotype-Phased Genome of the Dikaryotic Wheat Stripe Rust Fungus

Benjamin Schwessinger, Jana Sperschneider, William S Cuddy, Diana P Garnica, Marisa E Miller, Jennifer M Taylor, Peter N Dodds, Melania Figueroa, Robert F Park, John P Rathjen

Open access · goldAbstract read
In one paragraph

Article in mBio, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
33.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 155 citations in OpenAlex.

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18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Benjamin SchwessingerResearch School of Biology, the Australian National University, Acton, ACT, Australia benjamin.schwessinger@anu.edu.au will.cuddy@dpi.nsw.gov.au john.rathjen@anu.edu.au.ORCID 0000-0002-7194-2922
Jana SperschneiderCentre for Environment and Life Sciences, CSIRO Agriculture and Food, Perth, WA, Australia.
William S CuddyPlant Breeding Institute, Faculty of Agriculture and Environment, the University of Sydney, Narellan, NSW, Australia benjamin.schwessinger@anu.edu.au will.cuddy@dpi.nsw.gov.au john.rathjen@anu.edu.au.
Diana P GarnicaResearch School of Biology, the Australian National University, Acton, ACT, Australia.
Marisa E MillerDepartment of Plant Pathology, University of Minnesota, St. Paul, Minnesota, USA.
Jennifer M TaylorBlack Mountain Laboratories, CSIRO Agriculture and Food, Canberra, ACT, Australia.
Peter N DoddsBlack Mountain Laboratories, CSIRO Agriculture and Food, Canberra, ACT, Australia.
Melania FigueroaDepartment of Plant Pathology, University of Minnesota, St. Paul, Minnesota, USA.ORCID 0000-0003-2636-661X
Robert F ParkPlant Breeding Institute, Faculty of Agriculture and Environment, the University of Sydney, Narellan, NSW, Australia.
John P RathjenResearch School of Biology, the Australian National University, Acton, ACT, Australia benjamin.schwessinger@anu.edu.au will.cuddy@dpi.nsw.gov.au john.rathjen@anu.edu.au.
Australian National University · AUCommonwealth Scientific and Industrial Research Organisation · AUThe University of Sydney · AUUniversity of Minnesota · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A long-standing biological question is how evolution has shaped the genomic architecture of dikaryotic fungi. To answer this, high-quality genomic resources that enable haplotype comparisons are essential. Short-read genome assemblies for dikaryotic fungi are highly fragmented and lack haplotype-specific information due to the high heterozygosity and repeat content of these genomes. Here, we present a diploid-aware assembly of the wheat stripe rust fungus

Indexed as

Genetic VariationGenome, FungalHaplotypesBasidiomycotaPlant DiseasesTriticumVirulence FactorsVirulence FactorsbasidiomycetesDikaryongenomicsplant pathogens

Identifiers

PMID29463659
PMCPMC5821087
OpenAlexW2758731014

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.