Evidence map›Paper›PMID 29463605›Full record

ArticleJournal of bacteriology2018

Phenazines Regulate Nap-Dependent Denitrification in Pseudomonas aeruginosa Biofilms.

Yu-Cheng Lin, Matthew D Sekedat, William Cole Cornell, Gustavo M Silva, Chinweike Okegbe, Alexa Price-Whelan, Christine Vogel, Lars E P Dietrich

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Review
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  6. Article
  7. Spatial heterogeneity in biofilm metabolism elicited by local control of phenazine methylation.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Bacteria ModifymSphere · 2020
    Article
  15. Article
  16. Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Yu-Cheng LinDepartment of Biological Sciences, Columbia University, New York, New York, USA.
Matthew D SekedatDepartment of Biological Sciences, Columbia University, New York, New York, USA.
William Cole CornellDepartment of Biological Sciences, Columbia University, New York, New York, USA.
Gustavo M SilvaCenter for Genomics and Systems Biology, Department of Biology, New York University, New York, New York, USA.
Chinweike OkegbeDepartment of Biological Sciences, Columbia University, New York, New York, USA.
Alexa Price-WhelanDepartment of Biological Sciences, Columbia University, New York, New York, USA.
Christine VogelCenter for Genomics and Systems Biology, Department of Biology, New York University, New York, New York, USA.
Lars E P DietrichDepartment of Biological Sciences, Columbia University, New York, New York, USA LDietrich@columbia.edu.ORCID 0000-0003-2049-1137
Columbia University · USNew York University · US

Funding

Integration of redox-balancing mechanisms in Pseudomonas aeruginosa biofilmsR01AI103369 · NIAID · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI DIETRICH, LARS · 2013 to 2022
$4.1M
Robust statistical approaches for decoding protein and mRNA expression regulationR01GM113237 · NIGMS · NEW YORK UNIVERSITY · PI VOGEL, CHRISTINE · 2014 to 2017
$1.5M
NIAID NIH HHS R01 AI103369NIGMS NIH HHS R01 GM113237
6 · The paper itself

Abstract

Microbes in biofilms face the challenge of substrate limitation. In particular, oxygen often becomes limited for cells in

Indexed as

Bacterial ProteinsBiofilmsDenitrificationGene Expression Regulation, BacterialPhenazinesPromoter Regions, GeneticPseudomonas aeruginosaBacterial ProteinsPhenazinesAnrbiofilm physiologydenitrificationNapNirnitrate reductasenitrite reductaseRpoS

Identifiers

PMID29463605
PMCPMC5892114
OpenAlexW2791073960

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.