Evidence map›Paper›PMID 29462139›Full record

ArticlePLoS genetics2018

The COP9 Signalosome regulates seed germination by facilitating protein degradation of RGL2 and ABI5.

Dan Jin, Ming Wu, Bosheng Li, Birte Bücker, Philipp Keil, Shaoman Zhang, Jigang Li, Dingming Kang, Jie Liu, Jie Dong and 3 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
9.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 80 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. COP9 Signalosome's Role in Plant Defense Mechanisms.Plants (Basel, Switzerland) · 2025
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Underlying Biochemical and Molecular Mechanisms for Seed Germination.International journal of molecular sciences · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 2 countries.

Dan JinDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, Connecticut, United States of America.
Ming WuDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, Connecticut, United States of America.
Bosheng LiDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, Connecticut, United States of America.
Birte BückerDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, Connecticut, United States of America.
Philipp KeilDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, Connecticut, United States of America.
Shaoman ZhangState Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, China.
Jigang LiState Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, China.
Dingming KangMOE Key Laboratory of Crop Heterosis and Utilization, College of Agronomy and Biotechnology, China Agricultural University, Beijing, China.
Jie LiuDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, Connecticut, United States of America.
Jie DongDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, Connecticut, United States of America.
Xing Wang DengDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, Connecticut, United States of America.
Vivian IrishDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, Connecticut, United States of America.
Ning WeiDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, Connecticut, United States of America.ORCID 0000-0001-8827-1320
Yale University · USChina Agricultural University · CN

Funding

LIGHT SIGNAL TRANDUCTION IN ARABIDOPSISR01GM047850 · NIGMS · YALE UNIVERSITY · PI WEI, NING · 1996 to 2018
$4.1M
NIGMS NIH HHS R01 GM047850NIH HHS R01GM047850
6 · The paper itself

Abstract

The control of seed germination and seed dormancy are critical for the successful propagation of plant species, and are important agricultural traits. Seed germination is tightly controlled by the balance of gibberellin (GA) and abscisic acid (ABA), and is influenced by environmental factors. The COP9 Signalosome (CSN) is a conserved multi-subunit protein complex that is best known as a regulator of the Cullin-RING family of ubiquitin E3 ligases (CRLs). Multiple viable mutants of the CSN showed poor germination, except for csn5b-1. Detailed analyses showed that csn1-10 has a stronger seed dormancy, while csn5a-1 mutants exhibit retarded seed germination in addition to hyperdormancy. Both csn5a-1 and csn1-10 plants show defects in the timely removal of the germination inhibitors: RGL2, a repressor of GA signaling, and ABI5, an effector of ABA responses. We provide genetic evidence to demonstrate that the germination phenotype of csn1-10 is caused by over-accumulation of RGL2, a substrate of the SCF (CRL1) ubiquitin E3 ligase, while the csn5a-1 phenotype is caused by over-accumulation of RGL2 as well as ABI5. The genetic data are consistent with the hypothesis that CSN5A regulates ABI5 by a mechanism that may not involve CSN1. Transcriptome analyses suggest that CSN1 has a more prominent role than CSN5A during seed maturation, but CSN5A plays a more important role than CSN1 during seed germination, further supporting the functional distinction of these two CSN genes. Our study delineates the molecular targets of the CSN complex in seed germination, and reveals that CSN5 has additional functions in regulating ABI5, thus the ABA signaling pathway.

Indexed as

GerminationProteolysisArabidopsis ProteinsBasic-Leucine Zipper Transcription FactorsCOP9 Signalosome ComplexPhenotypePlants, Genetically ModifiedSeedsSignal TransductionTranscription FactorsABI5 protein, ArabidopsisArabidopsis ProteinsBasic-Leucine Zipper Transcription FactorsCOP9 Signalosome ComplexRGL2 protein, ArabidopsisTranscription Factors

Identifiers

PMID29462139
PMCPMC5834205
OpenAlexW2788621383

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.