Evidence map›Paper›PMID 29461981›Full record

ArticleThe Journal of clinical investigation2018

CYP3A4 mutation causes vitamin D-dependent rickets type 3.

Jeffrey D Roizen, Dong Li, Lauren O'Lear, Muhammad K Javaid, Nicholas J Shaw, Peter R Ebeling, Hanh H Nguyen, Christine P Rodda, Kenneth E Thummel, Tom D Thacher and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed, 2 pooled it
7.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 2 syntheses or guidelines pooled it, 116 citations in OpenAlex.

  1. Effect of epigenetics on vitamin D levels: a systematic review until December 2020.Archives of public health = Archives belges de sante publique · 2023
    Pooled it
  2. Pooled it
  3. Trial
  4. Review
  5. Review
  6. Article
  7. Refractory Rickets: Evaluation and Management.Indian journal of pediatrics · 2026
    Review
  8. Review
  9. Review
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Maternal loss of 24-hydroxylase causes increased intestinal calcium absorption and hypercalcemia during pregnancy but reduced skeletal resorption during lactation in mice.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2024
    Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 3 countries.

Jeffrey D RoizenDivision of Endocrinology and Diabetes and.
Dong LiCenter for Applied Genomics, The Children's Hospital of Philadelphia (CHOP), University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, USA.
Lauren O'LearDivision of Endocrinology and Diabetes and.
Muhammad K JavaidNuffield Department of Orthopaedics, Rheumatology and Musculoskeletal Sciences, University of Oxford, Oxford, United Kingdom.
Nicholas J ShawDepartment of Endocrinology and Diabetes, Birmingham Children's Hospital and Institute of Metabolism and Systems Research, University of Birmingham, Birmingham, United Kingdom.
Peter R EbelingDepartment of Medicine, School of Clinical Sciences, Monash University, Clayton, Victoria, Australia.
Hanh H NguyenDepartment of Medicine, School of Clinical Sciences, Monash University, Clayton, Victoria, Australia.
Christine P RoddaAustralian Institute for Musculoskeletal Science, Sunshine Hospital, and Department of Paediatrics, University of Melbourne,Parkville, Victoria, Australia.
Kenneth E ThummelDepartment of Pharmaceutics, University of Washington, Seattle, Washington, USA.
Tom D ThacherDepartment of Family Medicine, Mayo Clinic, Rochester, Minnesota, USA.
Hakon HakonarsonCenter for Applied Genomics, The Children's Hospital of Philadelphia (CHOP), University of Pennsylvania Perelman School of Medicine, Philadelphia, Pennsylvania, USA.
Michael A LevineDivision of Endocrinology and Diabetes and.
Diabetes Australia · AUChildren's Hospital of Philadelphia · USMonash University · AUAustralian Institute for Musculoskeletal Science · AUMayo Clinic · USNuffield Orthopaedic Centre · GBUniversity of Washington · US

Funding

Hormonal Regulation of Human CYP3AR01GM063666 · NIGMS · UNIVERSITY OF WASHINGTON · PI THUMMEL, KENNETH E. · 2002 to 2017
$5.3M
Repurposing rifampin to reduce elevated levels of blood and urine calcium in patients with inactivating mutations of CYP24A1R01DK112955 · NIDDK · CHILDREN'S HOSP OF PHILADELPHIA · PI Michael A. Levine, David R Weber · 2017 to 2026
$5.1M
Career Development Program in Pediatric Diabetes Research (K12) at CHOPK12DK094723 · NIDDK · CHILDREN'S HOSP OF PHILADELPHIA · PI WILLI, STEVEN M · 2011 to 2020
$3.6M
The Role of GCM2 in Parathyroid Gland HomeostasisR01DK079970 · NIDDK · CHILDREN'S HOSP OF PHILADELPHIA · PI LEVINE, MICHAEL A. · 2009 to 2015
$3.2M
Investigation of Hypercalciuria as a Cause of Impaired Bone Mineral Accrual in Type 1 DiabetesK23DK114477 · NIDDK · UNIVERSITY OF ROCHESTER · PI WEBER, DAVID R · 2017 to 2019
$573k
Regulation of serum vitamin D (calcidiol - 25(OH)D) by CYP2R1K08HD087964 · NICHD · CHILDREN'S HOSP OF PHILADELPHIA · PI ROIZEN, JEFFREY DAVID · 2016 to 2018
$388k
NICHD NIH HHS K08 HD087964NIDDK NIH HHS K12 DK094723NIDDK NIH HHS K23 DK114477NIDDK NIH HHS R01 DK079970NIDDK NIH HHS R01 DK112955NIGMS NIH HHS R01 GM063666
6 · The paper itself

Abstract

Genetic forms of vitamin D-dependent rickets (VDDRs) are due to mutations impairing activation of vitamin D or decreasing vitamin D receptor responsiveness. Here we describe two unrelated patients with early-onset rickets, reduced serum levels of the vitamin D metabolites 25-hydroxyvitamin D and 1,25-dihydroxyvitamin D, and deficient responsiveness to parent and activated forms of vitamin D. Neither patient had a mutation in any genes known to cause VDDR; however, using whole exome sequencing analysis, we identified a recurrent de novo missense mutation, c.902T>C (p.I301T), in CYP3A4 in both subjects that alters the conformation of substrate recognition site 4 (SRS-4). In vitro, the mutant CYP3A4 oxidized 1,25-dihydroxyvitamin D with 10-fold greater activity than WT CYP3A4 and 2-fold greater activity than CYP24A1, the principal inactivator of vitamin D metabolites. As CYP3A4 mutations have not previously been linked to rickets, these findings provide insight into vitamin D metabolism and demonstrate that accelerated inactivation of vitamin D metabolites represents a mechanism for vitamin D deficiency.

Indexed as

CalcitriolCytochrome P-450 CYP3AExomeMutationRicketsFemaleHEK293 CellsHumansMaleReceptors, CalcitriolVitamin DVitamin D3 24-HydroxylaseWhole Genome Sequencing25-hydroxyvitamin DCalcitriolCYP24A1 protein, humanCYP3A4 protein, humanCytochrome P-450 CYP3AReceptors, CalcitriolVDR protein, humanVitamin DVitamin D3 24-HydroxylaseBone BiologyBone diseaseGenetic diseasesGenetics

Identifiers

PMID29461981
PMCPMC5919884
OpenAlexW2788258036

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.