Evidence map›Paper›PMID 29460505›Full record

ArticleThe New phytologist2018

Identification of an algal xylan synthase indicates that there is functional orthology between algal and plant cell wall biosynthesis.

Jacob Krüger Jensen, Marta Busse-Wicher, Christian Peter Poulsen, Jonatan Ulrik Fangel, Peter James Smith, Jeong-Yeh Yang, Maria-Jesus Peña, Malene Hessellund Dinesen, Helle Juel Martens, Michael Melkonian and 8 more

Open access · hybridAbstract read
In one paragraph

Article in The New phytologist, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
11.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 77 citations in OpenAlex.

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  18. A Pipeline towards the Biochemical Characterization of theInternational journal of molecular sciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 9 institutions in 5 countries.

Jacob Krüger JensenDepartment of Plant Biology, Michigan State University, East Lansing, MI, 48823, USA.
Marta Busse-WicherDepartment of Biochemistry, University of Cambridge, Cambridge, CB2 1QW, UK.
Christian Peter PoulsenCarlsberg Research Laboratory, 1799, Copenhagen V, Denmark.
Jonatan Ulrik FangelCarlsberg Research Laboratory, 1799, Copenhagen V, Denmark.
Peter James SmithComplex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA, 30602, USA.
Jeong-Yeh YangComplex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA, 30602, USA.
Maria-Jesus PeñaComplex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA, 30602, USA.
Malene Hessellund DinesenCarlsberg Research Laboratory, 1799, Copenhagen V, Denmark.
Helle Juel MartensDepartment of Plant and Environmental Sciences, University of Copenhagen, 1971, Frederiksberg C, Denmark.
Michael MelkonianBotanical Institute, Department of Biological Sciences, Universität zu Köln, Köln, D-50674, Germany.
Gane Ka-Shu WongBGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen, 518083, China.
Kelley W MoremenComplex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA, 30602, USA.
Curtis Gene WilkersonDepartment of Plant Biology, Michigan State University, East Lansing, MI, 48823, USA.
Henrik Vibe SchellerJoint BioEnergy Institute, Emeryville, CA, 94608, USA.
Paul DupreeDepartment of Biochemistry, University of Cambridge, Cambridge, CB2 1QW, UK.
Peter UlvskovComplex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA, 30602, USA.
Breeanna Rae UrbanowiczComplex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA, 30602, USA.
Jesper HarholtCarlsberg Research Laboratory, 1799, Copenhagen V, Denmark.
Carlsberg Laboratory · DKUniversity of Georgia · USGreat Lakes Bioenergy Research Center · USOak Ridge National Laboratory · USUniversity of Cambridge · GBBGI Group (China) · CNLawrence Berkeley National Laboratory · USUniversity of Cologne · DEUniversity of Copenhagen · DK

Funding

TR&D3. Approaches to Proteoglycan Function at Biochemical and Cellular LevelsP41GM103390 · NIGMS · UNIVERSITY OF GEORGIA · PI MOREMEN, KELLEY W. · 2012 to 2019
$14.5M
Recombinant Production of Glycosylation Enzymes for Biochem/Structural StudiesP01GM107012 · NIGMS · UNIVERSITY OF GEORGIA · PI PRESTEGARD, JAMES H. · 2013 to 2017
$7.5M
NIGMS NIH HHS P01 GM107012NIGMS NIH HHS P41 GM103390
6 · The paper itself

Abstract

Insights into the evolution of plant cell walls have important implications for comprehending these diverse and abundant biological structures. In order to understand the evolving structure-function relationships of the plant cell wall, it is imperative to trace the origin of its different components. The present study is focused on plant 1,4-β-xylan, tracing its evolutionary origin by genome and transcriptome mining followed by phylogenetic analysis, utilizing a large selection of plants and algae. It substantiates the findings by heterologous expression and biochemical characterization of a charophyte alga xylan synthase. Of the 12 known gene classes involved in 1,4-β-xylan formation, XYS1/IRX10 in plants, IRX7, IRX8, IRX9, IRX14 and GUX occurred for the first time in charophyte algae. An XYS1/IRX10 ortholog from Klebsormidium flaccidum, designated K. flaccidumXYLAN SYNTHASE-1 (KfXYS1), possesses 1,4-β-xylan synthase activity, and 1,4-β-xylan occurs in the K. flaccidum cell wall. These data suggest that plant 1,4-β-xylan originated in charophytes and shed light on the origin of one of the key cell wall innovations to occur in charophyte algae, facilitating terrestrialization and emergence of polysaccharide-based plant cell walls.

Indexed as

Amino Acid MotifsBiosynthetic PathwaysCell WallCharophyceaeEvolution, MolecularHEK293 CellsHumansPentosyltransferasesPhylogenyPlant Cells1,4-beta-D-xylan synthasePentosyltransferasesbiosynthesiscell wallevolutionIRX10Klebsormidium flaccidumKlebsormidium nitensxylanXYS1

Identifiers

PMID29460505
PMCPMC5902652
OpenAlexW2788473422

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.