Evidence map›Paper›PMID 29459785›Full record

ArticleNature structural & molecular biology2018

GlcNAc-1-P-transferase-tunicamycin complex structure reveals basis for inhibition of N-glycosylation.

Jiho Yoo, Ellene H Mashalidis, Alvin C Y Kuk, Kazuki Yamamoto, Benjamin Kaeser, Satoshi Ichikawa, Seok-Yong Lee

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 93 papers.

0numbers the graph read from it
0cells of the map it votes in
93citing papers in PubMed
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

93 citing papers in PubMed, 167 citations in OpenAlex.

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    Review

33 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Jiho YooDepartment of Biochemistry, Duke University Medical Center, Durham, NC, USA.ORCID 0000-0002-0864-2142
Ellene H MashalidisDepartment of Biochemistry, Duke University Medical Center, Durham, NC, USA.ORCID 0000-0001-7435-2306
Alvin C Y KukDepartment of Biochemistry, Duke University Medical Center, Durham, NC, USA.ORCID 0000-0002-4122-0259
Kazuki YamamotoFaculty of Pharmaceutical Science, Hokkaido University, Sapporo, Japan.
Benjamin KaeserDepartment of Biochemistry, Duke University Medical Center, Durham, NC, USA.
Satoshi IchikawaFaculty of Pharmaceutical Science, Hokkaido University, Sapporo, Japan.ORCID 0000-0001-5345-5007
Seok-Yong LeeDepartment of Biochemistry, Duke University Medical Center, Durham, NC, USA. seok-yong.lee@duke.edu.ORCID 0000-0002-0662-9921
Duke Medical Center · USHokkaido University · JPDuke University · US

Funding

Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
Structure, function, and pharmacology of neuronal membrane transport proteinsR35NS097241 · NINDS · DUKE UNIVERSITY · PI LEE, SEOK-YONG · 2016 to 2023
$6.1M
Pixel Array Detector for X-ray CrystallographyS10RR029205 · NCRR · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2010 to 2010
$1.8M
Structural and Mechanistic Characterization of MraY Catalysis and InhibitionR01GM120594 · NIGMS · DUKE UNIVERSITY · PI LEE, SEOK-YONG · 2017 to 2020
$1.4M
NCRR NIH HHS S10 RR029205NIGMS NIH HHS P41 GM103403NIGMS NIH HHS R01 GM120594NINDS NIH HHS R35 NS097241
6 · The paper itself

Abstract

N-linked glycosylation is a predominant post-translational modification of protein in eukaryotes, and its dysregulation is the etiology of several human disorders. The enzyme UDP-N-acetylglucosamine:dolichyl-phosphate N-acetylglucosaminephosphotransferase (GlcNAc-1-P-transferase or GPT) catalyzes the first and committed step of N-linked glycosylation in the endoplasmic reticulum membrane, and it is the target of the natural product tunicamycin. Tunicamycin has potent antibacterial activity, inhibiting the bacterial cell wall synthesis enzyme MraY, but its usefulness as an antibiotic is limited by off-target inhibition of human GPT. Our understanding of how tunicamycin inhibits N-linked glycosylation and efforts to selectively target MraY are hampered by a lack of structural information. Here we present crystal structures of human GPT in complex with tunicamycin. Structural and functional analyses reveal the difference between GPT and MraY in their mechanisms of inhibition by tunicamycin. We demonstrate that this difference could be exploited to design MraY-specific inhibitors as potential antibiotics.

Indexed as

Anti-Bacterial AgentsBacterial ProteinsEnzyme InhibitorsGlycosylationHumansMagnesiumModels, MolecularProtein BindingProtein MultimerizationSubstrate SpecificityTransferasesTransferases (Other Substituted Phosphate Groups)TunicamycinAnti-Bacterial AgentsBacterial ProteinsEnzyme InhibitorsMagnesiummraY protein, BacteriaTransferasesTransferases (Other Substituted Phosphate Groups)TunicamycinUDP-GlcNAc-undecaprenyl phosphate N-acetylglucosaminyl 1-phosphate transferase

Identifiers

PMID29459785
PMCPMC5840018
OpenAlexW2791476169

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.