Evidence map›Paper›PMID 29459784›Full record

ArticleNature structural & molecular biology2018

2'-O-methylation in mRNA disrupts tRNA decoding during translation elongation.

Junhong Choi, Gabriele Indrisiunaite, Hasan DeMirci, Ka-Weng Ieong, Jinfan Wang, Alexey Petrov, Arjun Prabhakar, Gideon Rechavi, Dan Dominissini, Chuan He and 2 more

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed
5.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 138 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Seven wonders of RNA modification biology.RNA (New York, N.Y.) · 2026
    Review
  8. Article
  9. Article
  10. The Emerging Role of METTL3 in Lung Diseases.International journal of molecular sciences · 2025
    Review
  11. Genome-wide profiling of RNA 2'-bioRxiv : the preprint server for biology · 2025
    Article
  12. snoCLASH Reveals Extensive snoRNA-mRNA Interaction Networks.bioRxiv : the preprint server for biology · 2025
    Article
  13. Article
  14. Article
  15. Nuclear 2'-Science advances · 2025
    Article
  16. Article
  17. Circulation research · 2025
    Article
  18. Article
  19. Article
  20. Article

28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 3 countries.

Junhong ChoiDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0001-9291-5977
Gabriele IndrisiunaiteDepartment of Cell and Molecular Biology, Biomedical Center, Uppsala University, Uppsala, Sweden.
Hasan DeMirciStanford PULSE Institute, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.ORCID 0000-0002-9135-5397
Ka-Weng IeongDepartment of Cell and Molecular Biology, Biomedical Center, Uppsala University, Uppsala, Sweden.
Jinfan WangDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0003-4170-9289
Alexey PetrovDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA, USA.
Arjun PrabhakarDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA, USA.
Gideon RechaviCancer Research Center, Chaim Sheba Medical Center, Tel-Hashomer, Israel.
Dan DominissiniCancer Research Center, Chaim Sheba Medical Center, Tel-Hashomer, Israel.
Chuan HeDepartment of Chemistry, Department of Biochemistry and Molecular Biology and Institute for Biophysical Dynamics, The University of Chicago, Chicago, IL, USA.ORCID 0000-0003-4319-7424
Måns EhrenbergDepartment of Cell and Molecular Biology, Biomedical Center, Uppsala University, Uppsala, Sweden.
Joseph D PuglisiDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA, USA. puglisi@stanford.edu.ORCID 0000-0001-9268-5112
Stanford University · USUppsala University · SETel Aviv University · ILAuburn University · USHoward Hughes Medical Institute · USSLAC National Accelerator Laboratory · US

Funding

STRUCTURAL BASIS FOR RIBOSOME FUNCTIONSR01GM051266 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI PUGLISI, JOSEPH D · 1995 to 2021
$7.7M
Molecular Biophysics Training Program at StanfordT32GM008294 · NIGMS · STANFORD UNIVERSITY · PI HUANG, KERWYN C. · 1989 to 2019
$7.4M
Single molecule translational profilingR01GM099687 · NIGMS · STANFORD UNIVERSITY · PI PUGLISI, JOSEPH D · 2011 to 2015
$4.3M
Dynamics of eukaryotic translation initiation and its controlR01GM113078 · NIGMS · STANFORD UNIVERSITY · PI PUGLISI, JOSEPH D · 2016 to 2021
$2.9M
Eukaryotic Translational Initiation and its RegulationR01GM073999 · NIGMS · STANFORD UNIVERSITY · PI PUGLISI, JOSEPH D · 2007 to 2010
$1.2M
NIGMS NIH HHS R01 GM051266NIGMS NIH HHS R01 GM073999NIGMS NIH HHS R01 GM099687NIGMS NIH HHS R01 GM113078NIGMS NIH HHS T32 GM008294
6 · The paper itself

Abstract

Chemical modifications of mRNA may regulate many aspects of mRNA processing and protein synthesis. Recently, 2'-O-methylation of nucleotides was identified as a frequent modification in translated regions of human mRNA, showing enrichment in codons for certain amino acids. Here, using single-molecule, bulk kinetics and structural methods, we show that 2'-O-methylation within coding regions of mRNA disrupts key steps in codon reading during cognate tRNA selection. Our results suggest that 2'-O-methylation sterically perturbs interactions of ribosomal-monitoring bases (G530, A1492 and A1493) with cognate codon-anticodon helices, thereby inhibiting downstream GTP hydrolysis by elongation factor Tu (EF-Tu) and A-site tRNA accommodation, leading to excessive rejection of cognate aminoacylated tRNAs in initial selection and proofreading. Our current and prior findings highlight how chemical modifications of mRNA tune the dynamics of protein synthesis at different steps of translation elongation.

Indexed as

Peptide Chain Elongation, TranslationalAnticodonCodonMethylationRNA, MessengerRNA, TransferRNA, Transfer, Amino AcylAnticodonCodonRNA, MessengerRNA, TransferRNA, Transfer, Amino Acyl

Identifiers

PMID29459784
PMCPMC5840002
OpenAlexW2789115184

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.