Evidence map›Paper›PMID 29459680›Full record

ArticleNature genetics2018

Genome-wide mapping of global-to-local genetic effects on human facial shape.

Peter Claes, Jasmien Roosenboom, Julie D White, Tomek Swigut, Dzemila Sero, Jiarui Li, Myoung Keun Lee, Arslan Zaidi, Brooke C Mattern, Corey Liebowitz and 13 more

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 132 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
132citing papers in PubMed, 5 pooled it
23.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

132 citing papers in PubMed, 5 syntheses or guidelines pooled it, 238 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Pooled it
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Automated artificial intelligence-driven 3-dimensional craniofacial superimposition for clinically useful treatment outcomes in growing patients: A multicenter study.American journal of orthodontics and dentofacial orthopedics : official publication of the American Association of Orthodontists, its constituent societies, and the American Board of Orthodontics · 2026
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Genetic architecture of craniofacial morphogenesis: roles ofFrontiers in cell and developmental biology · 2026
    Review

72 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

23 authors at 5 institutions in 3 countries.

Peter ClaesDepartment of Electrical Engineering, ESAT/PSI, KU Leuven, Leuven, Belgium. peter.claes@kuleuven.be.ORCID http://orcid.org/0000-0001-9489-9819
Jasmien RoosenboomCenter for Craniofacial and Dental Genetics, Department of Oral Biology, University of Pittsburgh, Pittsburgh, PA, USA.
Julie D WhiteDepartment of Anthropology, Penn State University, University Park, PA, USA.
Tomek SwigutDepartment of Chemical and Systems Biology, Stanford University School of Medicine, Stanford, CA, USA.
Dzemila SeroDepartment of Electrical Engineering, ESAT/PSI, KU Leuven, Leuven, Belgium.ORCID http://orcid.org/0000-0002-0090-745X
Jiarui LiDepartment of Electrical Engineering, ESAT/PSI, KU Leuven, Leuven, Belgium.
Myoung Keun LeeCenter for Craniofacial and Dental Genetics, Department of Oral Biology, University of Pittsburgh, Pittsburgh, PA, USA.
Arslan ZaidiDepartment of Anthropology, Penn State University, University Park, PA, USA.
Brooke C MatternDepartment of Anthropology, Penn State University, University Park, PA, USA.
Corey LiebowitzDepartment of Anthropology, Penn State University, University Park, PA, USA.
Laurel PearsonDepartment of Anthropology, Penn State University, University Park, PA, USA.ORCID http://orcid.org/0000-0003-2806-2660
Tomás GonzálezDepartment of Anthropology, Penn State University, University Park, PA, USA.
Elizabeth J LeslieCenter for Craniofacial and Dental Genetics, Department of Oral Biology, University of Pittsburgh, Pittsburgh, PA, USA.
Jenna C CarlsonDepartment of Biostatistics, University of Pittsburgh, Pittsburgh, PA, USA.ORCID http://orcid.org/0000-0001-5483-0833
Ekaterina OrlovaDepartment of Human Genetics, University of Pittsburgh, Pittsburgh, PA, USA.
Paul SuetensDepartment of Electrical Engineering, ESAT/PSI, KU Leuven, Leuven, Belgium.
Dirk VandermeulenDepartment of Electrical Engineering, ESAT/PSI, KU Leuven, Leuven, Belgium.
Eleanor FeingoldDepartment of Biostatistics, University of Pittsburgh, Pittsburgh, PA, USA.
Mary L MarazitaCenter for Craniofacial and Dental Genetics, Department of Oral Biology, University of Pittsburgh, Pittsburgh, PA, USA.
John R ShafferDepartment of Human Genetics, University of Pittsburgh, Pittsburgh, PA, USA.
Joanna WysockaDepartment of Chemical and Systems Biology, Stanford University School of Medicine, Stanford, CA, USA. wysocka@stanford.edu.
Mark D ShriverDepartment of Anthropology, Penn State University, University Park, PA, USA. mds17@psu.edu.
Seth M WeinbergCenter for Craniofacial and Dental Genetics, Department of Oral Biology, University of Pittsburgh, Pittsburgh, PA, USA. smwst46@pitt.edu.ORCID http://orcid.org/0000-0001-9467-4556
University of Pittsburgh · USPennsylvania State University · USUniversitair Ziekenhuis Leuven · BEStanford University · USMurdoch Children's Research Institute · AU

Funding

Extending the Phenotype of Nonsyndromic Orofacial CleftsR01DE016148 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MARAZITA, MARY L., WEINBERG, SETH M · 2004 to 2018
$19.7M
FaceBase Management and Coordination HubU01DE020057 · NIDCR · UNIVERSITY OF IOWA · PI MARAZITA, MARY L., MURRAY, JEFFREY C · 2009 to 2014
$8.9M
The Genetic Architecture of Human Facial MorphologyR01DE027023 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CLAES, PETER, SHAFFER, JOHN R · 2017 to 2024
$5.2M
Epigenetic landscapes and regulatory divergence of human craniofacial traitsU01DE024430 · NIDCR · STANFORD UNIVERSITY · PI SELLERI, LICIA, WYSOCKA, JOANNA · 2014 to 2018
$3.1M
3D Analysis of Normal Facial Variation: Data Repository and Genetics (Research)U01DE020078 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MARAZITA, MARY L., WEINBERG, SETH M · 2009 to 2013
$2.0M
Genetics of Craniofacial Disorders and Related PhenotypesR00DE025060 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LESLIE-CLARKSON, ELIZABETH JANE · 2017 to 2019
$732k
Genetics of Craniofacial Disorders and Related PhenotypesK99DE025060 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LESLIE-CLARKSON, ELIZABETH JANE · 2015 to 2016
$188k
NIDCR NIH HHS K99 DE025060NIDCR NIH HHS R00 DE025060NIDCR NIH HHS R01 DE016148NIDCR NIH HHS R01 DE027023NIDCR NIH HHS U01 DE020057NIDCR NIH HHS U01 DE020078NIDCR NIH HHS U01 DE024430
6 · The paper itself

Abstract

Genome-wide association scans of complex multipartite traits like the human face typically use preselected phenotypic measures. Here we report a data-driven approach to phenotyping facial shape at multiple levels of organization, allowing for an open-ended description of facial variation while preserving statistical power. In a sample of 2,329 persons of European ancestry, we identified 38 loci, 15 of which replicated in an independent European sample (n = 1,719). Four loci were completely new. For the others, additional support (n = 9) or pleiotropic effects (n = 2) were found in the literature, but the results reported here were further refined. All 15 replicated loci highlighted distinctive patterns of global-to-local genetic effects on facial shape and showed enrichment for active chromatin elements in human cranial neural crest cells, suggesting an early developmental origin of the facial variation captured. These results have implications for studies of facial genetics and other complex morphological traits.

Indexed as

Chromosome MappingGenome-Wide Association StudyAdultCohort StudiesFaceGenetic Association StudiesGenotypeHumansMaxillofacial DevelopmentMultifactorial InheritancePhenotypePolymorphism, Single NucleotideQuantitative Trait LociUnited StatesWhite PeopleYoung Adult

Identifiers

PMID29459680
PMCPMC5937280
OpenAlexW2789017128

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.