Evidence map›Paper›PMID 29459671›Full record

ArticleScientific reports2018

In silico guided reconstruction and analysis of ICAM-1-binding var genes from Plasmodium falciparum.

Eilidh Carrington, Thomas D Otto, Tadge Szestak, Frank Lennartz, Matt K Higgins, Chris I Newbold, Alister G Craig

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Variable surface antigen expression, virulence, and persistent infection byMicrobiology and molecular biology reviews : MMBR · 2025
    Review
  2. ICAM-1Malaria journal · 2022
    Article
  3. Article
  4. Structural insights into diverse modes of ICAM-1 binding byProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Eilidh CarringtonLiverpool School of Tropical Medicine, Pembroke Place, Liverpool, L3 5QA, UK.ORCID 0000-0001-7419-0810
Thomas D OttoWellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UK.
Tadge SzestakLiverpool School of Tropical Medicine, Pembroke Place, Liverpool, L3 5QA, UK.
Frank LennartzDepartment of Biochemistry, University of Oxford, South Parks Road, Oxford, OX1 3QU, UK.
Matt K HigginsDepartment of Biochemistry, University of Oxford, South Parks Road, Oxford, OX1 3QU, UK.ORCID 0000-0002-2870-1955
Chris I NewboldWellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SA, UK.
Alister G CraigLiverpool School of Tropical Medicine, Pembroke Place, Liverpool, L3 5QA, UK. alister.craig@lstmed.ac.uk.ORCID 0000-0003-0914-6164
Liverpool School of Tropical Medicine · GBUniversity of Oxford · GBWellcome Sanger Institute · GBSwiss Tropical and Public Health Institute · CH

Funding

Medical Research Council G0901062Medical Research Council MC_PC_16052Wellcome Trust 095507/Z/11/ZWellcome Trust 104792/Z/14/Z
6 · The paper itself

Abstract

The Plasmodium falciparum variant surface antigen PfEMP1 expressed on the surface of infected erythrocytes is thought to play a major role in the pathology of severe malaria. As the sequence pool of the var genes encoding PfEMP1 expands there are opportunities, despite the high degree of sequence diversity demonstrated by this gene family, to reconstruct full-length var genes from small sequence tags generated from patient isolates. To test whether this is possible we have used a set of recently laboratory adapted ICAM-1-binding parasite isolates to generate sequence tags and, from these, to identify the full-length PfEMP1 being expressed by them. In a subset of the strains available we were able to produce validated, full-length var gene sequences and use these to conduct biophysical analyses of the ICAM-1 binding regions.

Indexed as

Amino Acid SequenceAnimalsAntigens, SurfaceComputer SimulationErythrocytesHumansIntercellular Adhesion Molecule-1Malaria, FalciparumPlasmodium falciparumProtein BindingProtozoan ProteinsSequence AlignmentAntigens, Surfaceerythrocyte membrane protein 1, Plasmodium falciparumIntercellular Adhesion Molecule-1Protozoan Proteins

Identifiers

PMID29459671
PMCPMC5818487
OpenAlexW2788919075

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.