ArticleScientific reports2018
Comparative transcriptomics with self-organizing map reveals cryptic photosynthetic differences between two accessions of North American Lake cress.
Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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Who cites it
10 citing papers in PubMed.
- Systems analysis of leaf anatomy and transcriptome using unsupervised machine learning provides insight on photosynthesis development and evolution in non-model grasses.Plant direct · 2026Article
- Single-station analysis of Campi Flegrei (Italy) seismic signals using multiscale entropy and unsupervised learning.Scientific reports · 2026Article
- PhytoKeys · 2025Article
- Probing of plant transcriptomes reveals the hidden genetic diversity of the family Secoviridae.Archives of virology · 2024Article
- A chromosome-level genome assembly for the amphibious plant Rorippa aquatica reveals its allotetraploid origin and mechanisms of heterophylly upon submergence.Communications biology · 2024Article
- Leaf Cell Morphology Alternation in Response to Environmental Signals inInternational journal of molecular sciences · 2022Article
- Mechanisms of the Morphological Plasticity Induced by Phytohormones and the Environment in Plants.International journal of molecular sciences · 2021Review
- Molecular and Biochemical Differences in Leaf Explants and the Implication for Regeneration Ability inPlants (Basel, Switzerland) · 2020Article
- Impact of Autophagy on Gene Expression and Tapetal Programmed Cell Death During Pollen Development in Rice.Frontiers in plant science · 2020Article
- Kingdom-wide comparison reveals the evolution of diurnal gene expression in Archaeplastida.Nature communications · 2019Article
Corrections and comments
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Authors and funding
11 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Because natural variation in wild species is likely the result of local adaptation, it provides a valuable resource for understanding plant-environmental interactions. Rorippa aquatica (Brassicaceae) is a semi-aquatic North American plant with morphological differences between several accessions, but little information available on any physiological differences. Here, we surveyed the transcriptomes of two R. aquatica accessions and identified cryptic physiological differences between them. We first reconstructed a Rorippa phylogeny to confirm relationships between the accessions. We performed large-scale RNA-seq and de novo assembly; the resulting 87,754 unigenes were then annotated via comparisons to different databases. Between-accession physiological variation was identified with transcriptomes from both accessions. Transcriptome data were analyzed with principal component analysis and self-organizing map. Results of analyses suggested that photosynthetic capability differs between the accessions. Indeed, physiological experiments revealed between-accession variation in electron transport rate and the redox state of the plastoquinone pool. These results indicated that one accession may have adapted to differences in temperature or length of the growing season.
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