Evidence map›Paper›PMID 29458654›Full record

ArticleThe Journal of general virology2018

Identification and characterization of viral defective RNA genomes in influenza B virus.

Zizhang Sheng, Runxia Liu, Jieshi Yu, Zhiguang Ran, Simon J Newkirk, Wenfeng An, Feng Li, Dan Wang

Abstract read
In one paragraph

Article in The Journal of general virology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 17 citations in OpenAlex.

  1. Pooled it
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  8. A Virus Is a Community: Diversity within Negative-Sense RNA Virus Populations.Microbiology and molecular biology reviews : MMBR · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Zizhang ShengDepartment of Biochemistry and Molecular Biophysics, Columbia University, New York, NY, USA.
Runxia LiuDepartment of Biology and Microbiology, South Dakota State University, Brookings, SD, USA.
Jieshi YuDepartment of Biology and Microbiology, South Dakota State University, Brookings, SD, USA.
Zhiguang RanDepartment of Biology and Microbiology, South Dakota State University, Brookings, SD, USA.
Simon J NewkirkDepartment of Pharmaceutical Sciences, South Dakota State University, Brookings, SD, USA.
Wenfeng AnDepartment of Pharmaceutical Sciences, South Dakota State University, Brookings, SD, USA.
Feng LiDepartment of Biology and Microbiology, South Dakota State University, Brookings, SD, USA.
Dan WangBioSystems Networks and Translational Research (BioSNTR), Brookings, SD, USA.
South Dakota State University · USColumbia University · US

Funding

Evolution and biology of Influenza B viruses in pigsR21AI121906 · NIAID · KANSAS STATE UNIVERSITY · PI MA, WENJUN · 2017 to 2018
$412k
NIAID NIH HHS R21 AI121906
6 · The paper itself

Abstract

Influenza B virus (FLUBV) is an important pathogen that infects humans and causes seasonal influenza epidemics. To date, little is known about defective genomes of FLUBV and their roles in viral replication. In this study, by using a next-generation sequencing approach, we analyzed total mRNAs extracted from A549 cells infected with B/Brisbane/60/2008 virus (Victoria lineage), and identified four defective FLUBV genomes with two (PB1∆A and PB1∆B) from the polymerase basic subunit 1 (PB1) segment and the other two (M∆A and M∆B) from the matrix (M) protein-encoding segment. These defective genomes contained significant deletions in the central regions with each having the potential for encoding a novel polypeptide. Significantly, each of the discovered defective RNAs can potently inhibit the replication of B/Yamanashi/166/98 (Yamagata lineage). Furthermore, PB1∆A was able to interfere modestly with influenza A virus (FLUAV) replication. In summary, our study provides important initial insights into FLUBV defective-interfering genomes, which can be further explored to achieve better understanding of the replication, pathogenesis and evolution of FLUBV.

Indexed as

A549 CellsDefective VirusesGenome, ViralHumansInfluenza A virusInfluenza B virusInfluenza, HumanRNA, ViralViral ProteinsVirus ReplicationRNA, ViralViral Proteinsdefective RNA genomesInfluenza B virusinterfering

Identifiers

PMID29458654
PMCPMC5982128
OpenAlexW2785650761

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.