Evidence map›Paper›PMID 29458433›Full record

ArticleJournal of translational medicine2018

Computational analysis identifies putative prognostic biomarkers of pathological scarring in skin wounds.

Sridevi Nagaraja, Lin Chen, Luisa A DiPietro, Jaques Reifman, Alexander Y Mitrophanov

Open access · goldAbstract read
In one paragraph

Article in Journal of translational medicine, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
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  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Sridevi NagarajaDepartment of Defense Biotechnology High Performance Computing Software Applications Institute, Telemedicine and Advanced Technology Research Center, US Army Medical Research and Materiel Command, MCMR-TT, 504 Scott Street, Ft. Detrick, MD, 21702, USA.ORCID 0000-0002-2174-2033
Lin ChenCenter for Wound Healing and Tissue Regeneration, College of Dentistry, University of Illinois, Chicago, 801 S. Paulina Street, Chicago, IL, 60612, USA.ORCID 0000-0001-8530-2363
Luisa A DiPietroCenter for Wound Healing and Tissue Regeneration, College of Dentistry, University of Illinois, Chicago, 801 S. Paulina Street, Chicago, IL, 60612, USA.ORCID 0000-0002-4842-1547
Jaques ReifmanDepartment of Defense Biotechnology High Performance Computing Software Applications Institute, Telemedicine and Advanced Technology Research Center, US Army Medical Research and Materiel Command, MCMR-TT, 504 Scott Street, Ft. Detrick, MD, 21702, USA. jaques.reifman.civ@mail.mil.ORCID 0000-0001-7292-2029
Alexander Y MitrophanovDepartment of Defense Biotechnology High Performance Computing Software Applications Institute, Telemedicine and Advanced Technology Research Center, US Army Medical Research and Materiel Command, MCMR-TT, 504 Scott Street, Ft. Detrick, MD, 21702, USA.ORCID 0000-0002-9019-4034
Telemedicine & Advanced Technology Research Center · USUniversity of Illinois Chicago · US

Funding

ANGIOGENESIS IN WOUND REPAIRR01GM050875 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI DIPIETRO, LUISA A · 1999 to 2020
$6.6M
NIGMS NIH HHS R01 GM050875
6 · The paper itself

Abstract

backgroundPathological scarring in wounds is a prevalent clinical outcome with limited prognostic options. The objective of this study was to investigate whether cellular signaling proteins could be used as prognostic biomarkers of pathological scarring in traumatic skin wounds.

methodsWe used our previously developed and validated computational model of injury-initiated wound healing to simulate the time courses for platelets, 6 cell types, and 21 proteins involved in the inflammatory and proliferative phases of wound healing. Next, we analysed thousands of simulated wound-healing scenarios to identify those that resulted in pathological (i.e., excessive) scarring. Then, we identified candidate proteins that were elevated (or decreased) at the early stages of wound healing in those simulations and could therefore serve as predictive biomarkers of pathological scarring outcomes. Finally, we performed logistic regression analysis and calculated the area under the receiver operating characteristic curve to quantitatively assess the predictive accuracy of the model-identified putative biomarkers.

resultsWe identified three proteins (interleukin-10, tissue inhibitor of matrix metalloproteinase-1, and fibronectin) whose levels were elevated in pathological scars as early as 2 weeks post-wounding and could predict a pathological scarring outcome occurring 40 days after wounding with 80% accuracy.

conclusionOur method for predicting putative prognostic wound-outcome biomarkers may serve as an effective means to guide the identification of proteins predictive of pathological scarring.

Indexed as

Wound HealingBiomarkersCicatrixComputational BiologyHumansKineticsLogistic ModelsPrognosisROC CurveSkinBiomarkersBiomarkersComputational modelingPathological scarringPredictive analysis

Identifiers

PMID29458433
PMCPMC5819197
OpenAlexW2791705557

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.