Evidence map›Paper›PMID 29458080›Full record

ArticleReproductive toxicology (Elmsford, N.Y.)2018

Transcriptomic and phenotypic profiling in developing zebrafish exposed to thyroid hormone receptor agonists.

Derik E Haggard, Pamela D Noyes, Katrina M Waters, Robert L Tanguay

Abstract read
In one paragraph

Article in Reproductive toxicology (Elmsford, N.Y.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 31 citations in OpenAlex.

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  13. Translational Toxicology in Zebrafish.Current opinion in toxicology
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Derik E HaggardDepartment of Environmental and Molecular Toxicology, Oregon State University, Corvallis, OR, United States.
Pamela D NoyesDepartment of Environmental and Molecular Toxicology, Oregon State University, Corvallis, OR, United States; Current: National Center for Environmental Assessment, Office of Research and Development, U.S. Environmental Protection Agency, Washington, DC, United States.
Katrina M WatersBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, United States.
Robert L TanguayDepartment of Environmental and Molecular Toxicology, Oregon State University, Corvallis, OR, United States. Electronic address: Robert.Tanguay@oregonstate.edu.
Oregon State University · USEnvironmental Protection Agency · USPacific Northwest National Laboratory · US

Funding

Research Experience and Training Coordination CoreP42ES016465 · NIEHS · OREGON STATE UNIVERSITY · PI Robyn L Tanguay · 2009 to 2026
$52.5M
Reducing Susceptibility to Environmental Stress Throughout the Life SpanP30ES000210 · NIEHS · OREGON STATE UNIVERSITY · PI BECKMAN, JOSEPH S · 1985 to 2015
$21.4M
MODE OF ACTION OF ENVIRONMENTAL TOXICANTST32ES007060 · NIEHS · OREGON STATE UNIVERSITY · PI Jamie DeWitt, Siva Kumar Kolluri · 1985 to 2026
$11.6M
NIEHS NIH HHS P30 ES000210NIEHS NIH HHS P42 ES016465NIEHS NIH HHS T32 ES007060
6 · The paper itself

Abstract

There continues to be a need to develop in vivo high-throughput screening (HTS) and computational methods to screen chemicals for interaction with the estrogen, androgen, and thyroid pathways and as complements to in vitro HTS assays. This study explored the utility of an embryonic zebrafish HTS approach to identify and classify endocrine bioactivity using phenotypically-anchored transcriptome profiling. Transcriptome analysis was conducted on zebrafish embryos exposed to 25 estrogen-, androgen-, or thyroid-active chemicals at concentrations that elicited adverse malformations or mortality at 120 h post-fertilization in 80% of animals exposed. Analysis of the top 1000 significant differentially expressed transcripts and developmental toxicity profiles across all treatments identified a unique transcriptional and phenotypic signature for thyroid hormone receptor agonists. This unique signature has the potential to be used as a tiered in vivo HTS and may aid in identifying chemicals that interact with the thyroid hormone receptor.

Indexed as

High-Throughput Screening AssaysAndrogensAnimalsEmbryo, NonmammalianEndocrine DisruptorsEstrogensGene Expression ProfilingHormonesPhenotypeReal-Time Polymerase Chain ReactionReceptors, Thyroid HormoneSequence Analysis, RNATranscriptomeZebrafishAndrogensEndocrine DisruptorsEstrogensHormonesReceptors, Thyroid HormoneEndocrine disruptorsHigh-throughputPhenotypic anchoringToxCastTranscriptomicsZebrafish

Identifiers

PMID29458080
PMCPMC5878140
OpenAlexW2791913223

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.