Evidence map›Paper›PMID 29457789›Full record

ArticleThe Journal of clinical investigation2018

A common variant alters SCN5A-miR-24 interaction and associates with heart failure mortality.

Xiaoming Zhang, Jin-Young Yoon, Michael Morley, Jared M McLendon, Kranti A Mapuskar, Rebecca Gutmann, Haider Mehdi, Heather L Bloom, Samuel C Dudley, Patrick T Ellinor and 15 more

Abstract read
In one paragraph

Article in The Journal of clinical investigation, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
3.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
  2. Article
  3. Sodium Channel mRNA Binding Proteins.JACC. Basic to translational science · 2026
    Article
  4. Article
  5. Review
  6. Article
  7. Long-QT Trafficking Map.Circulation · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Multilayer control of cardiac electrophysiology by microRNAs.Journal of molecular and cellular cardiology · 2022
    Review
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

25 authors at 11 institutions in 1 country.

Xiaoming ZhangDepartment of Internal Medicine, University of Iowa Carver College of Medicine, Iowa City, Iowa, USA.
Jin-Young YoonDepartment of Internal Medicine, University of Iowa Carver College of Medicine, Iowa City, Iowa, USA.
Michael MorleyDepartment of Internal Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Jared M McLendonDepartment of Internal Medicine, University of Iowa Carver College of Medicine, Iowa City, Iowa, USA.
Kranti A MapuskarDepartment of Radiation Oncology, University of Iowa Carver College of Medicine, Iowa City, Iowa, USA.
Rebecca GutmannDepartment of Internal Medicine, University of Iowa Carver College of Medicine, Iowa City, Iowa, USA.
Haider MehdiDepartment of Internal Medicine, University of Iowa Carver College of Medicine, Iowa City, Iowa, USA.
Heather L BloomDepartment of Medicine, Emory University Medical Center, Atlanta, Georgia, USA.
Samuel C DudleyDepartment of Medicine, University of Minnesota, Minneapolis, Minnesota, USA.
Patrick T EllinorDepartment of Medicine, Massachusetts General Hospital, Boston, Massachusetts, USA.
Alaa A ShalabyDepartment of Medicine, University of Pittsburgh Medical Center, Pittsburgh, Pennsylvania, USA.
Raul WeissDepartment of Internal Medicine, The Ohio State University Medical Center, Columbus, Ohio, USA.
W H Wilson TangDepartment of Cardiovascular Medicine, Cleveland Clinic Lerner College of Medicine, Cleveland, Ohio, USA.
Christine S MoravecDepartment of Molecular Cardiology, Cleveland Clinic Lerner College of Medicine, Cleveland, Ohio, USA.
Madhurmeet SinghDepartment of Medicine, University of Pittsburgh Medical Center, Pittsburgh, Pennsylvania, USA.
Anne L TaylorDepartment of Medicine, Columbia University College of Physicians and Surgeons, New York, New York, USA.
Clyde W YancyDivision of Cardiology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois, USA.
Arthur M FeldmanDepartment of Medicine, Temple University School of Medicine, Philadelphia, Pennsylvania, USA.
Dennis M McNamaraDepartment of Medicine, University of Pittsburgh Medical Center, Pittsburgh, Pennsylvania, USA.
Kaikobad IraniDepartment of Internal Medicine, University of Iowa Carver College of Medicine, Iowa City, Iowa, USA.
Douglas R SpitzDepartment of Radiation Oncology, University of Iowa Carver College of Medicine, Iowa City, Iowa, USA.
Patrick BrehenyDepartment of Biostatistics, University of Iowa College of Public Heath, Iowa City, Iowa, USA.
Kenneth B MarguliesDepartment of Internal Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Barry LondonDepartment of Internal Medicine, University of Iowa Carver College of Medicine, Iowa City, Iowa, USA.
Ryan L BoudreauDepartment of Internal Medicine, University of Iowa Carver College of Medicine, Iowa City, Iowa, USA.
University of Iowa · USUniversity of Pittsburgh Medical Center · USCleveland Clinic Lerner College of Medicine · USUniversity of Pennsylvania · USColumbia University · USEmory University · USMassachusetts General Hospital · USNorthwestern University · USTemple University · USThe Ohio State University Wexner Medical Center · USUniversity of Minnesota · US

Funding

Pulmonary Toxicology Facility CoreP30ES005605 · NIEHS · UNIVERSITY OF IOWA · PI Jong Sung Kim · 1990 to 2026
$40.5M
INTERDISCIPLINARY CARDIOVASCULAR RESEARCH FELLOWSHIPT32HL007121 · NHLBI · UNIVERSITY OF IOWA · PI LONDON, BARRY · 1985 to 2020
$15.1M
Integrative genomics of human heart failureR01HL105993 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI ASHLEY, EUAN A, CAPPOLA, THOMAS P. · 2011 to 2014
$8.9M
SUMOylation of Voltage-Gated Sodium Channels In Neuronal Hyperexcitability of Alzheimer’s DementiaR01HL115955 · NHLBI · UNIVERSITY OF IOWA · PI IRANI, KAIKOBAD J., LONDON, BARRY · 2013 to 2023
$5.4M
The SIRT1-Gpd1L-NAD+ interactome in regulation of the Neuronal Sodium Channel: Implications for Cognitive Impairment of Alzheimer’s DementiaR01HL147545 · NHLBI · UNIVERSITY OF IOWA · PI BRENNER, CHARLES M, IRANI, KAIKOBAD J. · 2019 to 2022
$2.9M
Genetic Modulators of Sudden DeathR01HL077398 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LONDON, BARRY · 2004 to 2008
$2.6M
Enhancing Metabolic Oxidative Stress and Therapy Responses in Cancer Stem CellsR01CA182804 · NCI · UNIVERSITY OF IOWA · PI SPITZ, DOUGLAS ROBERT · 2014 to 2018
$1.7M
NCI NIH HHS R01 CA182804NHLBI NIH HHS R01 HL077398NHLBI NIH HHS R01 HL105993NHLBI NIH HHS R01 HL115955NHLBI NIH HHS R01 HL147545NHLBI NIH HHS T32 HL007121NIEHS NIH HHS P30 ES005605
6 · The paper itself

Abstract

SCN5A encodes the voltage-gated Na+ channel NaV1.5 that is responsible for depolarization of the cardiac action potential and rapid intercellular conduction. Mutations disrupting the SCN5A coding sequence cause inherited arrhythmias and cardiomyopathy, and single-nucleotide polymorphisms (SNPs) linked to SCN5A splicing, localization, and function associate with heart failure-related sudden cardiac death. However, the clinical relevance of SNPs that modulate SCN5A expression levels remains understudied. We recently generated a transcriptome-wide map of microRNA (miR) binding sites in human heart, evaluated their overlap with common SNPs, and identified a synonymous SNP (rs1805126) adjacent to a miR-24 site within the SCN5A coding sequence. This SNP was previously shown to reproducibly associate with cardiac electrophysiological parameters, but was not considered to be causal. Here, we show that miR-24 potently suppresses SCN5A expression and that rs1805126 modulates this regulation. We found that the rs1805126 minor allele associates with decreased cardiac SCN5A expression and that heart failure subjects homozygous for the minor allele have decreased ejection fraction and increased mortality, but not increased ventricular tachyarrhythmias. In mice, we identified a potential basis for this in discovering that decreased Scn5a expression leads to accumulation of myocardial reactive oxygen species. Together, these data reiterate the importance of considering the mechanistic significance of synonymous SNPs as they relate to miRs and disease, and highlight a surprising link between SCN5A expression and nonarrhythmic death in heart failure.

Indexed as

Action PotentialsAgedAllelesAnimalsBinding SitesDeath, Sudden, CardiacFemaleGene Expression ProfilingGenotypeHeart Conduction SystemHeart FailureHeart RateHomozygoteHumansLinkage DisequilibriumMaleMicroRNAsMIRN24 microRNA, humanNAV1.5 Voltage-Gated Sodium ChannelSCN5A protein, humanScn5a protein, mouseCardiologyGeneticsGenetic variationIon channelsNoncoding RNAs

Identifiers

PMID29457789
PMCPMC5824852
OpenAlexW2788706750

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.