Evidence map›Paper›PMID 29456765›Full record

ArticleClinical epigenetics2018

Peripheral blood epi-signature of Claes-Jensen syndrome enables sensitive and specific identification of patients and healthy carriers with pathogenic mutations in

Laila C Schenkel, Erfan Aref-Eshghi, Cindy Skinner, Peter Ainsworth, Hanxin Lin, Guillaume Paré, David I Rodenhiser, Charles Schwartz, Bekim Sadikovic

Open access · goldAbstract read
In one paragraph

Article in Clinical epigenetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
7.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 66 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Complexity in Genetic Epilepsies: A Comprehensive Review.International journal of molecular sciences · 2023
    Review
  8. Article
  9. Article
  10. Review
  11. Variants inHGG advances · 2022
    Article
  12. Article
  13. Review
  14. Reprogramming of the epigenome in neurodevelopmental disorders.Critical reviews in biochemistry and molecular biology · 2022
    Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Laila C Schenkel *1Department of Pathology and Laboratory Medicine, Western University, London, Ontario Canada.
Erfan Aref-Eshghi *1Department of Pathology and Laboratory Medicine, Western University, London, Ontario Canada.
Cindy SkinnerGreenwood Genetics Center, Greenwood, SC USA.
Peter Ainsworth1Department of Pathology and Laboratory Medicine, Western University, London, Ontario Canada.
Hanxin Lin1Department of Pathology and Laboratory Medicine, Western University, London, Ontario Canada.
Guillaume Paré4Department of Pathology and Molecular Medicine, McMaster University, Hamilton, Ontario Canada.
David I Rodenhiser5Departments of Pediatrics, Biochemistry and Oncology, Western University, London, Ontario Canada.
Charles SchwartzGreenwood Genetics Center, Greenwood, SC USA.
Bekim Sadikovic1Department of Pathology and Laboratory Medicine, Western University, London, Ontario Canada.
Western University · CAGreenwood Genetic Center · USLondon Health Sciences Centre · CAMcMaster University · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Claes-Jensen syndrome is an X-linked inherited intellectual disability caused by mutations in the Results: Genome-wide DNA methylation analysis of 7 male patients affected with Claes-Jensen syndrome and 56 age- and sex-matched controls identified a specific DNA methylation defect (epi-signature) in the peripheral blood of these patients, including 1769 individual CpGs and 9 genomic regions. Six healthy female carriers showed less pronounced but distinctive changes in the same regions enabling their differentiation from both patients and controls. Highly specific computational model using the most significant methylation changes demonstrated 100% accuracy in differentiating patients, carriers, and controls in the training cohort, which was confirmed on a separate cohort of patients and carriers. The 100% specificity of this unique epi-signature was further confirmed on additional 500 unaffected controls and 600 patients with intellectual disability and developmental delay, including other patient cohorts with previously described epi-signatures. Conclusion: Peripheral blood epi-signature in Claes-Jensen syndrome can be used for molecular diagnosis and carrier identification and assist with interpretation of genetic variants of unknown clinical significance in the

Indexed as

DNA MethylationAdolescentAdultAgedCase-Control StudiesChildChild, PreschoolComputational BiologyDementiaDNAEpigenomicsFemaleGenetic TestingHearing Loss, CentralHeterozygoteHistone DemethylasesDNAHistone DemethylasesKDM5C protein, humanClaes-JensenDNA methylationKDM5CVariants of unknown significanceX-linked intellectual disability

Identifiers

PMID29456765
PMCPMC5813334
OpenAlexW2803978842

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.