Evidence map›Paper›PMID 29456084›Full record

ArticleCell2018

Rescue of Fragile X Syndrome Neurons by DNA Methylation Editing of the FMR1 Gene.

X Shawn Liu, Hao Wu, Marine Krzisch, Xuebing Wu, John Graef, Julien Muffat, Denes Hnisz, Charles H Li, Bingbing Yuan, Chuanyun Xu and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 289 papers.

0numbers the graph read from it
0cells of the map it votes in
289citing papers in PubMed
44.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

289 citing papers in PubMed, 505 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Review
  6. Narcolepsy is (not) an autoimmune disease.Nature reviews. Neurology · 2026
    Review
  7. The mMolecular psychiatry · 2026
    Article
  8. Regulation of Translation by PKA Signaling Pathway.International journal of molecular sciences · 2026
    Review
  9. Advances and clinical potential of epigenome editing.Cellular and molecular life sciences : CMLS · 2026
    Review
  10. bioRxiv : the preprint server for biology · 2026
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. DNA Methylation ofEnvironment & health (Washington, D.C.) · 2026
    Article
  19. Article
  20. Review

229 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 2 countries.

X Shawn LiuWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA.
Hao WuWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA; Fulcrum Therapeutics, One Kendall Square, Binney Street b7102, Cambridge, MA 02139, USA.
Marine KrzischWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA.
Xuebing WuWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA.
John GraefFulcrum Therapeutics, One Kendall Square, Binney Street b7102, Cambridge, MA 02139, USA.
Julien MuffatWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA.
Denes HniszWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA.
Charles H LiWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02142, USA.
Bingbing YuanWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA.
Chuanyun XuWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA.
Yun LiWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA.
Dan VershkovThe Hebrew University of Jerusalem, Edmond J. Safra Campus, Givat Ram, Jerusalem 91904, Israel.
Angela CacaceFulcrum Therapeutics, One Kendall Square, Binney Street b7102, Cambridge, MA 02139, USA.
Richard A YoungWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02142, USA.
Rudolf JaenischWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02142, USA. Electronic address: jaenisch@wi.mit.edu.
Whitehead Institute for Biomedical Research · USFulcrum Therapeutics (United States) · USMassachusetts Institute of Technology · USHebrew University of Jerusalem · IL

Funding

GENOMIC IMPRINTING AND THE CLONING OF MICER37CA084198 · NCI · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI JAENISCH, RUDOLF · 2000 to 2008
$9.2M
In Vitro Reprogramming of Somatic Cells into Pluripotent ES-like CellsR37HD045022 · NICHD · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI JAENISCH, RUDOLF · 2009 to 2017
$7.5M
Transcriptional condensates, epigenetic editing and Rett SyndromeR01MH104610 · NIMH · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI JAENISCH, RUDOLF, YOUNG, RICHARD · 2014 to 2023
$7.4M
An iPSC based platform for functionally assessing genetic and environmental riskR01NS088538 · NINDS · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI JAENISCH, RUDOLF, MYERS, RICHARD H · 2014 to 2018
$5.0M
Mechanism and function of autosomal analog of X inactivationR01GM114864 · NIGMS · DANA-FARBER CANCER INST · PI GIMELBRANT, ALEXANDER · 2014 to 2018
$4.9M
Nuclear Cloning and the Reprogramming of the GenomeR01HD045022 · NICHD · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI JAENISCH, RUDOLF · 2003 to 2008
$4.7M
Graduate Training in Computational and Systems BiologyT32GM087237 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BURGE, CHRISTOPHER B · 2009 to 2023
$4.6M
Programming and Reprogramming Human CellsR01CA084198 · NCI · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI JAENISCH, RUDOLF · 2009 to 2013
$4.3M
Transcriptional regulatory networks in living cellsR01GM123511 · NIGMS · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI YOUNG, RICHARD · 2017 to 2020
$3.6M
NCI NIH HHS R01 CA084198NCI NIH HHS R37 CA084198NICHD NIH HHS R01 HD045022NICHD NIH HHS R37 HD045022NIGMS NIH HHS R01 GM114864NIGMS NIH HHS R01 GM123511NIGMS NIH HHS T32 GM087237NIMH NIH HHS R01 MH104610NINDS NIH HHS R01 NS088538
6 · The paper itself

Abstract

Fragile X syndrome (FXS), the most common genetic form of intellectual disability in males, is caused by silencing of the FMR1 gene associated with hypermethylation of the CGG expansion mutation in the 5' UTR of FMR1 in FXS patients. Here, we applied recently developed DNA methylation editing tools to reverse this hypermethylation event. Targeted demethylation of the CGG expansion by dCas9-Tet1/single guide RNA (sgRNA) switched the heterochromatin status of the upstream FMR1 promoter to an active chromatin state, restoring a persistent expression of FMR1 in FXS iPSCs. Neurons derived from methylation-edited FXS iPSCs rescued the electrophysiological abnormalities and restored a wild-type phenotype upon the mutant neurons. FMR1 expression in edited neurons was maintained in vivo after engrafting into the mouse brain. Finally, demethylation of the CGG repeats in post-mitotic FXS neurons also reactivated FMR1. Our data establish that demethylation of the CGG expansion is sufficient for FMR1 reactivation, suggesting potential therapeutic strategies for FXS.

Indexed as

Gene EditingAnimalsCRISPR-Associated Protein 9DNA MethylationEpigenesis, GeneticFragile X Messenger Ribonucleoprotein 1Fragile X SyndromeHEK293 CellsHeterochromatinHumansInduced Pluripotent Stem CellsKineticsMaleMiceNeuronsPhenotypeCRISPR-Associated Protein 9Fragile X Messenger Ribonucleoprotein 1HeterochromatinRNA, Guide, CRISPR-Cas SystemsCGG repeatsCRISPR/Cas9DNA methylation editingFMR1 reactivationfragile X syndrome

Identifiers

PMID29456084
PMCPMC6375087
OpenAlexW2785429866

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.