Evidence map›Paper›PMID 29455846›Full record

ArticleAdvances in immunology2018

The Unusual Genetics and Biochemistry of Bovine Immunoglobulins.

Robyn L Stanfield, Jeremy Haakenson, Thaddeus C Deiss, Michael F Criscitiello, Ian A Wilson, Vaughn V Smider

Abstract read
In one paragraph

Article in Advances in immunology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

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  14. The smallest functional antibody fragment: Ultralong CDR H3 antibody knob regions potently neutralize SARS-CoV-2.Proceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Robyn L StanfieldThe Scripps Research Institute, La Jolla, CA, United States.
Jeremy HaakensonThe Scripps Research Institute, La Jolla, CA, United States.
Thaddeus C DeissCollege of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX, United States.
Michael F CriscitielloCollege of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX, United States.
Ian A WilsonThe Scripps Research Institute, La Jolla, CA, United States.
Vaughn V SmiderThe Scripps Research Institute, La Jolla, CA, United States. Electronic address: vvsmider@scripps.edu.

Funding

Support Component D/Vaccine Discovery, Concept to ClinicUM1AI100663 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI MCELRATH, MARGARET JULIANA · 2012 to 2018
$131.5M
Molecular and Structural Studies of Antibody Diversity MechanismsR01GM105826 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI SMIDER, VAUGHN VASIL · 2014 to 2021
$3.1M
Cow ultralong CDR3 antibodies targeting HIV gp120R21AI120791 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI SMIDER, VAUGHN VASIL · 2016 to 2017
$525k
NIAID NIH HHS R21 AI120791NIAID NIH HHS UM1 AI100663NIGMS NIH HHS R01 GM105826
6 · The paper itself

Abstract

Antibodies are the key circulating molecules that have evolved to fight infection by the adaptive immune system of vertebrates. Typical antibodies of most species contain six complementarity-determining regions (CDRs), where the third CDR of the heavy chain (CDR H3) has the greatest diversity and often makes the most significant contact with antigen. Generally, the process of V(D)J recombination produces a vast repertoire of antibodies; multiple V, D, and J gene segments recombine with additional junctional diversity at the V-D and D-J joints, and additional combinatorial possibilities occur through heavy- and light-chain pairing. Despite these processes, the overall structure of the resulting antibody is largely conserved, and binding to antigen occurs predominantly through the CDR loops of the immunoglobulin V domains. Bovines have deviated from this general paradigm by having few VH regions and thus little germline combinatorial diversity, but their antibodies contain long CDR H3 regions, with substantial diversity generated through somatic hypermutation. A subset of the repertoire comprises antibodies with ultralong CDR H3s, which can reach over 70 amino acids in length. Structurally, these unusual antibodies form a β-ribbon "stalk" and disulfide-bonded "knob" that protrude far from the antibody surface. These long CDR H3s allow cows to mount a particularly robust immune response when immunized with viral antigens, particularly to broadly neutralizing epitopes on a stabilized HIV gp140 trimer, which has been a challenge for other species. The unusual genetics and structural biology of cows provide for a unique paradigm for creation of immune diversity and could enable generation of antibodies against especially challenging targets and epitopes.

Indexed as

AnimalsAntibodies, NeutralizingAntibody DiversityAntibody FormationCattleComplementarity Determining RegionsEpitopesHumansImmunoglobulinsVaccinesAntibodies, NeutralizingComplementarity Determining RegionsEpitopesImmunoglobulinsVaccinesAntibodyAntibody diversityAntibody repertoireBovine immunoglobulinCow antibodyKnobLong complementarity-determining regionRuminant antibodyStalkUltralong CDR3

Identifiers

PMID29455846
PMCPMC5935254

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.