Evidence map›Paper›PMID 29453862›Full record

ArticleMolecular microbiology2018

Insights into transcriptional silencing and anti-silencing in Shigella flexneri: a detailed molecular analysis of the icsP virulence locus.

Natasha Weatherspoon-Griffin, Michael A Picker, Krystle L Pew, Hiromichi S Park, Daren R Ginete, Monika Ma Karney, Pashtana Usufzy, Maria I Castellanos, Juan Carlos Duhart, Dustin J Harrison and 7 more

Open access · greenAbstract read
In one paragraph

Article in Molecular microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. A Tale aboutMicroorganisms · 2023
    Review
  9. VirB, a key transcriptional regulator ofbioRxiv : the preprint server for biology · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. The T3SS ofMicroorganisms · 2020
    Review
  15. Article
  16. Article
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 1 institution in 1 country.

Natasha Weatherspoon-GriffinSchool of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV 89154-4004, USA.
Michael A PickerSchool of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV 89154-4004, USA.
Krystle L PewSchool of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV 89154-4004, USA.
Hiromichi S ParkSchool of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV 89154-4004, USA.
Daren R GineteSchool of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV 89154-4004, USA.
Monika Ma KarneySchool of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV 89154-4004, USA.
Pashtana UsufzySchool of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV 89154-4004, USA.
Maria I CastellanosSchool of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV 89154-4004, USA.
Juan Carlos DuhartSchool of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV 89154-4004, USA.
Dustin J HarrisonSchool of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV 89154-4004, USA.
Jillian N SoceaSchool of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV 89154-4004, USA.
Alexander D KarabachevSchool of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV 89154-4004, USA.
Christopher T HensleySchool of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV 89154-4004, USA.
Amber J HowertonSchool of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV 89154-4004, USA.
Rosa Ojeda-DauloSchool of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV 89154-4004, USA.
Joy A ImmakSchool of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV 89154-4004, USA.
Helen J WingSchool of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV 89154-4004, USA.ORCID 0000-0003-0123-5568
University of Nevada, Las Vegas · US

Funding

Outreach/Diversity/Pipeline ProjectP20GM103440 · NIGMS · UNIVERSITY OF NEVADA RENO · PI Eduardo A Robleto · 2012 to 2026
$58.0M
UNDERGRADUATE RESEARCH AND TRAININGP20RR016464 · NCRR · UNIVERSITY OF NEVADA RENO · PI REIBER, CARL · 2001 to 2011
$30.3M
Understanding transcriptional silencing & anti-silencing mechanisms in ShigellaR15AI090573 · NIAID · UNIVERSITY OF NEVADA LAS VEGAS · PI WING, HELEN J · 2010 to 2024
$2.3M
NCRR NIH HHS P20 RR016464NIAID NIH HHS R15 AI090573NIGMS NIH HHS P20 GM103440
6 · The paper itself

Abstract

Transcriptional silencing and anti-silencing mechanisms modulate bacterial physiology and virulence in many human pathogens. In Shigella species, many virulence plasmid genes are silenced by the histone-like nucleoid structuring protein H-NS and anti-silenced by the virulence gene regulator VirB. Despite the key role that these regulatory proteins play in Shigella virulence, their mechanisms of transcriptional control remain poorly understood. Here, we characterize the regulatory elements and their relative spacing requirements needed for the transcriptional silencing and anti-silencing of icsP, a locus that requires remotely located regulatory elements for both types of transcriptional control. Our findings highlight the flexibility of the regulatory elements' positions with respect to each other, and yet, a molecular roadblock docked between the VirB binding site and the upstream H-NS binding region abolishes transcriptional anti-silencing by VirB, providing insight into transcriptional anti-silencing. Our study also raises the need to re-evaluate the currently proposed VirB binding site. Models of transcriptional silencing and anti-silencing at this genetic locus are presented, and the implications for understanding these regulatory mechanisms in bacteria are discussed.

Indexed as

Bacterial Outer Membrane ProteinsBacterial ProteinsBinding SitesDNA-Binding ProteinsGenetic LociHumansPlasmidsPromoter Regions, GeneticRepressor ProteinsShigella flexneriTranscription, GeneticVirulenceBacterial Outer Membrane ProteinsBacterial ProteinsDNA-Binding ProteinsH-NS protein, bacteriaRepressor ProteinsSopA protein, Bacteria

Identifiers

PMID29453862
PMCPMC6311345
OpenAlexW2790920245

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.