Evidence map›Paper›PMID 29453058›Full record

ArticleVirology2018

Antigenic and genetic evolution of contemporary swine H1 influenza viruses in the United States.

Daniela S Rajao, Tavis K Anderson, Pravina Kitikoon, Jered Stratton, Nicola S Lewis, Amy L Vincent

Abstract read
In one paragraph

Article in Virology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Daniela S RajaoVirus and Prion Research Unit, National Animal Disease Center, USDA-ARS, 1920 Dayton Avenue, PO Box 70, Ames, IA 50010, USA.
Tavis K AndersonVirus and Prion Research Unit, National Animal Disease Center, USDA-ARS, 1920 Dayton Avenue, PO Box 70, Ames, IA 50010, USA.
Pravina KitikoonVirus and Prion Research Unit, National Animal Disease Center, USDA-ARS, 1920 Dayton Avenue, PO Box 70, Ames, IA 50010, USA.
Jered StrattonVirus and Prion Research Unit, National Animal Disease Center, USDA-ARS, 1920 Dayton Avenue, PO Box 70, Ames, IA 50010, USA.
Nicola S LewisDepartment of Zoology, University of Cambridge, Downing St, Cambridge CB2 3EJ, UK.
Amy L VincentVirus and Prion Research Unit, National Animal Disease Center, USDA-ARS, 1920 Dayton Avenue, PO Box 70, Ames, IA 50010, USA. Electronic address: amy.vincent@ars.usda.gov.

Funding

NIAID NIH HHS HHSN272201400008C
6 · The paper itself

Abstract

Several lineages of influenza A viruses (IAV) currently circulate in North American pigs. Genetic diversity is further increased by transmission of IAV between swine and humans and subsequent evolution. Here, we characterized the genetic and antigenic evolution of contemporary swine H1N1 and H1N2 viruses representing clusters H1-α (1A.1), H1-β (1A.2), H1pdm (1A.3.3.2), H1-γ (1A.3.3.3), H1-δ1 (1B.2.2), and H1-δ2 (1B.2.1) currently circulating in pigs in the United States. The δ1-viruses diversified into two new genetic clades, H1-δ1a (1B.2.2.1) and H1-δ1b (1B.2.2.2), which were also antigenically distinct from the earlier H1-δ1-viruses. Further characterization revealed that a few key amino acid changes were associated with antigenic divergence in these groups. The continued genetic and antigenic evolution of contemporary H1 viruses might lead to loss of vaccine cross-protection that could lead to significant economic impact to the swine industry, and represents a challenge to public health initiatives that attempt to minimize swine-to-human IAV transmission.

Indexed as

Evolution, MolecularAmino Acid SequenceAnimalsAntigens, ViralGenetic VariationInfluenza A Virus, H1N1 SubtypeInfluenza A Virus, H1N2 SubtypeOrthomyxoviridae InfectionsSwineSwine DiseasesTime FactorsUnited StatesViral ProteinsAntigens, ViralViral ProteinsAntigenic diversityH1N1H1N2Influenza ASwineVirus evolution

Identifiers

PMID29453058
PMCPMC8608352

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.