Evidence map›Paper›PMID 29452408›Full record

ArticleHuman molecular genetics2018

Genome-wide association study identifies seven novel susceptibility loci for primary open-angle glaucoma.

Yukihiro Shiga, Masato Akiyama, Koji M Nishiguchi, Kota Sato, Nobuhiro Shimozawa, Atsushi Takahashi, Yukihide Momozawa, Makoto Hirata, Koichi Matsuda, Taiki Yamaji and 59 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 89 papers, 6 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
89citing papers in PubMed, 6 pooled it
21.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

89 citing papers in PubMed, 6 syntheses or guidelines pooled it, 186 citations in OpenAlex.

  1. Pooled it
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  13. Variant-to-gene mapping identifiesbioRxiv : the preprint server for biology · 2026
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29 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

69 authors at 20 institutions in 7 countries.

Yukihiro ShigaLaboratory for Statistical Analysis, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Masato AkiyamaLaboratory for Statistical Analysis, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Koji M NishiguchiDepartment of Ophthalmology, Tohoku University Graduate School of Medicine, Miyagi, Japan.
Kota SatoDepartment of Ophthalmology, Tohoku University Graduate School of Medicine, Miyagi, Japan.
Nobuhiro ShimozawaTsukuba Primate Research Center, National Institutes of Biomedical Innovation, Health and Nutrition, Ibaraki, Japan.
Atsushi TakahashiLaboratory for Statistical Analysis, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Yukihide MomozawaLaboratory for Genotyping Development, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Makoto HirataInstitute of Medical Science, The University of Tokyo, Tokyo, Japan.
Koichi MatsudaGraduate School of Frontier Sciences, The University of Tokyo, Tokyo, Japan.
Taiki YamajiDivision of Epidemiology, Center for Public Health Sciences, National Cancer Center, Tokyo, Japan.
Motoki IwasakiDivision of Epidemiology, Center for Public Health Sciences, National Cancer Center, Tokyo, Japan.
Shoichiro TsuganeCenter for Public Health Sciences, National Cancer Center, Tokyo, Japan.
Isao OzeDivision of Molecular and Clinical Epidemiology, Aichi Cancer Center Research Institute, Nagoya, Japan.
Haruo MikamiCancer Prevention Center, Chiba Cancer Center Research Institute, Chiba, Japan.
Mariko NaitoDepartment of Preventive Medicine, Nagoya University Graduate School of Medicine, Nagoya, Japan.
Kenji WakaiDepartment of Preventive Medicine, Nagoya University Graduate School of Medicine, Nagoya, Japan.
Munemitsu YoshikawaDepartment of Ophthalmology and Visual Sciences, Kyoto University Graduate School of Medicine, Kyoto, Japan.
Masahiro MiyakeDepartment of Ophthalmology and Visual Sciences, Kyoto University Graduate School of Medicine, Kyoto, Japan.
Kenji YamashiroDepartment of Ophthalmology and Visual Sciences, Kyoto University Graduate School of Medicine, Kyoto, Japan.
Japan Glaucoma Society Omics Group (JGS-OG)
Kenji KashiwagiDepartment of Ophthalmology, Faculty of Medicine, University of Yamanashi, Yamanashi, Japan.
Takeshi IwataDivision of Molecular and Cellular Biology, National Institute of Sensory Organs, Tokyo Medical Center, National Hospital Organization, Tokyo, Japan.
Fumihiko MabuchiDepartment of Ophthalmology, Faculty of Medicine, University of Yamanashi, Yamanashi, Japan.
Mitsuko TakamotoDepartment of Ophthalmology, University of Tokyo, Tokyo, Japan.
Mineo OzakiOzaki Eye Hospital, Hyuga, Miyazaki, Japan.
Kazuhide KawaseDepartment of Ophthalmology, Gifu University Graduate School of Medicine, Gifu, Japan.
Makoto AiharaDepartment of Ophthalmology, University of Tokyo, Tokyo, Japan.
Makoto AraieKanto Central Hospital of the Mutual Aid Association of Public School Teachers, Tokyo, Japan.
Tetsuya YamamotoDepartment of Ophthalmology, Gifu University Graduate School of Medicine, Gifu, Japan.
Yoshiaki KiuchiDepartment of Ophthalmology and Visual Sciences, Hiroshima University, Hiroshima, Japan.
Makoto NakamuraDivision of Ophthalmology, Department of Surgery, Kobe University Graduate School of Medicine, Kobe, Japan.
Yasuhiro IkedaDepartment of Ophthalmology, Graduate School of Medical Sciences, Kyushu University, Fukuoka, Japan.
Koh-Hei SonodaDepartment of Ophthalmology, Graduate School of Medical Sciences, Kyushu University, Fukuoka, Japan.
Tatsuro IshibashiDepartment of Ophthalmology, Graduate School of Medical Sciences, Kyushu University, Fukuoka, Japan.
Koji NittaFukuiken Saiseikai Hospital, Fukui, Japan.
Aiko IwaseTajimi Iwase Eye Clinic, Tajimi, Japan.
Shiroaki ShiratoYotsuya Shirato Eye Clinic, Tokyo, Japan.
Yoshitaka OkaOka Eye Clinic, Fukuoka, Japan.
Mamoru SatohIwate Tohoku Medical Megabank Organization, Iwate Medical University, Iwate, Japan.
Makoto SasakiIwate Tohoku Medical Megabank Organization, Iwate Medical University, Iwate, Japan.
Nobuo FuseDepartment of Integrative Genomics, Tohoku Medical Megabank Organization, Miyagi, Japan.
Yoichi SuzukiDepartment of Education and Training, Tohoku Medical Megabank Organization, Miyagi, Japan.
Ching-Yu ChengSingapore Eye Research Institute, Singapore National Eye Centre, Singapore.
Chiea Chuen KhorGenome Institute of Singapore, Singapore.
Mani BaskaranSingapore Eye Research Institute, Singapore National Eye Centre, Singapore.
Shamira PereraSingapore Eye Research Institute, Singapore National Eye Centre, Singapore.
Tin AungSingapore Eye Research Institute, Singapore National Eye Centre, Singapore.
Eranga N VithanaSingapore Eye Research Institute, Singapore National Eye Centre, Singapore.
Jessica N Cooke BaileyDepartment of Population and Quantitative Health Sciences, Institute for Computational Biology, Case Western Reserve University School of Medicine, Cleveland, OH, USA.
Jae H KangChanning Division of Network Medicine, Brigham and Women's Hospital, Boston, MA, USA.
Louis R PasqualeDepartment of Ophthalmology, Harvard Medical School, Boston, MA, USA.
Jonathan L HainesDepartment of Population and Quantitative Health Sciences, Institute for Computational Biology, Case Western Reserve University School of Medicine, Cleveland, OH, USA.
NEIGHBORHOOD Consortium
Janey L WiggsDepartment of Ophthalmology, Harvard Medical School, Boston, MA, USA.
Kathryn P BurdonMenzies Institute for Medical Research, University of Tasmania, Hobart, TAS, Australia.
Puya GharahkhaniQIMR Berghofer Medical Research Institute, Brisbane, QLD, Australia.
Alex W HewittCentre for Eye Research Australia, University of Melbourne, Melbourne, VIC, Australia.
David A MackeyMenzies Institute for Medical Research, University of Tasmania, Hobart, TAS, Australia.
Stuart MacGregorQIMR Berghofer Medical Research Institute, Brisbane, QLD, Australia.
Jamie E CraigDepartment of Ophthalmology, Flinders University, Adelaide, SA, Australia.
R Rand AllinghamDepartment of Ophthalmology, Duke University, Durham, NC, USA.
Micheal HauserDuke University Medical Center, Durham, NC, USA.
Adeyinka AshayeDepartment of Ophthalmology, College of Medicine, University of Ibadan, Ibadan, Nigeria.
Donald L BudenzDepartment of Ophthalmology, University of North Carolina at Chapel Hill, USA.
Stephan AkafoUniversity of Ghana School of Medicine and Dentistry, Ghana.
Susan E I WilliamsDivision of Ophthalmology, Department of Neurosciences, University of the Witwatersrand, South Africa.
Yoichiro KamataniLaboratory for Statistical Analysis, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Toru NakazawaDepartment of Ophthalmology, Tohoku University Graduate School of Medicine, Miyagi, Japan.
Michiaki KuboLaboratory for Genotyping Development, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Tohoku University · JPKyushu University · JPNational University of Singapore · SGIwate Medical University · JPKyoto University · JPRIKEN Center for Integrative Medical Sciences · JPSingapore National Eye Center · SGBrigham and Women's Hospital · USFlinders University · AUGifu Prefectural Tajimi Hospital · JPHarvard University · USHiroshima University · JPKanto Central Hospital · JPLions Eye Institute · AUNagoya University · JPNational Center for Global Health and Medicine · JPThe University of Tokyo · JPTokyo Medical Center · JPUniversity of Miyazaki · JPUniversity of North Carolina at Chapel Hill · US

Funding

P30 Core Grant for Vision ResearchP30EY014104 · NEI · MASSACHUSETTS EYE AND EAR INFIRMARY · PI Eric A Pierce · 2002 to 2026
$15.1M
The NEIGHBORHOOD: POAG Heritable Overall Operational DatabaseR01EY022305 · NEI · MASSACHUSETTS EYE AND EAR INFIRMARY · PI WIGGS, JANEY L · 2012 to 2025
$7.9M
Molecular Genetics of Norma Tension GlaucomaR01EY023512 · NEI · UNIVERSITY OF IOWA · PI FINGERT, JOHN H, MULLINS, ROBERT FOSTER · 2014 to 2017
$1.8M
Long Noncoding RNA lncLOXL1 and Exfoliation Syndrome.R21EY028671 · NEI · AUGUSTA UNIVERSITY · PI LIU, YUTAO · 2018 to 2019
$467k
NEI NIH HHS P30 EY014104NEI NIH HHS R01 EY022305NEI NIH HHS R01 EY023512NEI NIH HHS R21 EY028671
6 · The paper itself

Abstract

Primary open-angle glaucoma (POAG) is the leading cause of irreversible blindness worldwide for which 15 disease-associated loci had been discovered. Among them, only 5 loci have been associated with POAG in Asians. We carried out a genome-wide association study and a replication study that included a total of 7378 POAG cases and 36 385 controls from a Japanese population. After combining the genome-wide association study and the two replication sets, we identified 11 POAG-associated loci, including 4 known (CDKN2B-AS1, ABCA1, SIX6 and AFAP1) and 7 novel loci (FNDC3B, ANKRD55-MAP3K1, LMX1B, LHPP, HMGA2, MEIS2 and LOXL1) at a genome-wide significance level (P < 5.0×10-8), bringing the total number of POAG-susceptibility loci to 22. The 7 novel variants were subsequently evaluated in a multiethnic population comprising non-Japanese East Asians (1008 cases, 591 controls), Europeans (5008 cases, 35 472 controls) and Africans (2341 cases, 2037 controls). The candidate genes located within the new loci were related to ocular development (LMX1B, HMGA2 and MAP3K1) and glaucoma-related phenotypes (FNDC3B, LMX1B and LOXL1). Pathway analysis suggested epidermal growth factor receptor signaling might be involved in POAG pathogenesis. Genetic correlation analysis revealed the relationships between POAG and systemic diseases, including type 2 diabetes and cardiovascular diseases. These results improve our understanding of the genetic factors that affect the risk of developing POAG and provide new insight into the genetic architecture of POAG in Asians.

Indexed as

Genetic LociGenetic Predisposition to DiseaseAsian PeopleBlack PeopleCardiovascular DiseasesCase-Control StudiesDiabetes Mellitus, Type 2ErbB ReceptorsEye ProteinsFemaleGene ExpressionGenome-Wide Association StudyGlaucoma, Open-AngleHumansMaleMutationEGFR protein, humanErbB ReceptorsEye Proteins

Identifiers

PMID29452408
PMCPMC6251544
OpenAlexW2789844096

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.