Evidence map›Paper›PMID 29449410›Full record

ArticleGenome research2018

Conserved microRNA targeting reveals preexisting gene dosage sensitivities that shaped amniote sex chromosome evolution.

Sahin Naqvi, Daniel W Bellott, Kathy S Lin, David C Page

Open access · bronzeAbstract read
In one paragraph

Article in Genome research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 51 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Compensation of gene dosage on the mammalian X.Development (Cambridge, England) · 2024
    Review
  11. Article
  12. Article
  13. Review
  14. RNA stability controlled by mNature structural & molecular biology · 2023
    Article
  15. Review
  16. Article
  17. X chromosome agents of sexual differentiation.Nature reviews. Endocrinology · 2022
    Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Sahin NaqviWhitehead Institute, Cambridge, Massachusetts 02142, USA.
Daniel W BellottWhitehead Institute, Cambridge, Massachusetts 02142, USA.
Kathy S LinWhitehead Institute, Cambridge, Massachusetts 02142, USA.
David C PageWhitehead Institute, Cambridge, Massachusetts 02142, USA.
Whitehead Institute for Biomedical Research · USHoward Hughes Medical Institute · US

Funding

Graduate Training in Computational and Systems BiologyT32GM087237 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BURGE, CHRISTOPHER B · 2009 to 2023
$4.6M
Making structurally complex genomic regions accessibleR01HG007852 · NHGRI · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI PAGE, DAVID C. · 2015 to 2017
$2.7M
Howard Hughes Medical InstituteNHGRI NIH HHS R01 HG007852NIGMS NIH HHS T32 GM087237
6 · The paper itself

Abstract

Mammalian X and Y Chromosomes evolved from an ordinary autosomal pair. Genetic decay of the Y led to X Chromosome inactivation (XCI) in females, but some Y-linked genes were retained during the course of sex chromosome evolution, and many X-linked genes did not become subject to XCI. We reconstructed gene-by-gene dosage sensitivities on the ancestral autosomes through phylogenetic analysis of microRNA (miRNA) target sites and compared these preexisting characteristics to the current status of Y-linked and X-linked genes in mammals. Preexisting heterogeneities in dosage sensitivity, manifesting as differences in the extent of miRNA-mediated repression, predicted either the retention of a Y homolog or the acquisition of XCI following Y gene decay. Analogous heterogeneities among avian Z-linked genes predicted either the retention of a W homolog or gene-specific dosage compensation following W gene decay. Genome-wide analyses of human copy number variation indicate that these heterogeneities consisted of sensitivity to both increases and decreases in dosage. We propose a model of XY/ZW evolution incorporating such preexisting dosage sensitivities in determining the evolutionary fates of individual genes. Our findings thus provide a more complete view of the role of dosage sensitivity in shaping the mammalian and avian sex chromosomes and reveal an important role for post-transcriptional regulatory sequences (miRNA target sites) in sex chromosome evolution.

Indexed as

Evolution, MolecularAnimalsChickensConserved SequenceDNA Copy Number VariationsFemaleGene DosageGene Expression RegulationGenomeHumansMaleMammalsMicroRNAsPhylogenyX Chromosome InactivationY ChromosomeMicroRNAs

Identifiers

PMID29449410
PMCPMC5880238
OpenAlexW2789602238

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.