Evidence map›Paper›PMID 29447178›Full record

ArticlePLoS neglected tropical diseases2018

Joint ancestry and association test indicate two distinct pathogenic pathways involved in classical dengue fever and dengue shock syndrome.

Marisa Oliveira, Worachart Lert-Itthiporn, Bruno Cavadas, Verónica Fernandes, Ampaiwan Chuansumrit, Orlando Anunciação, Isabelle Casademont, Fanny Koeth, Marina Penova, Kanchana Tangnararatchakit and 8 more

Open access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 20 citations in OpenAlex.

  1. Nutritional Profile and Health Benefits ofFoods (Basel, Switzerland) · 2022
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  2. Frontiers in pharmacology · 2022
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  4. SARS-CoV-2 infection in India bucks the trend: Trained innate immunity?American journal of human biology : the official journal of the Human Biology Council · 2021
    Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Host genetic control of mosquito-borne Flavivirus infections.Mammalian genome : official journal of the International Mammalian Genome Society · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 8 institutions in 5 countries.

Marisa Oliveirai3S-Instituto de Investigação e Inovação em Saúde, Universidade do Porto, Porto, Portugal.
Worachart Lert-ItthipornBioinformatics and Data Management for Research, Office for Research and Development, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand.
Bruno Cavadasi3S-Instituto de Investigação e Inovação em Saúde, Universidade do Porto, Porto, Portugal.
Verónica Fernandesi3S-Instituto de Investigação e Inovação em Saúde, Universidade do Porto, Porto, Portugal.
Ampaiwan ChuansumritDepartment of Pediatrics, Faculty of Medicine, Ramathibodi Hospital, Mahidol University, Bangkok, Thailand.
Orlando AnunciaçãoInstituto de Patologia e Imunologia Molecular da Universidade do Porto (IPATIMUP), Porto, Portugal.
Isabelle CasademontFunctional Genetics of Infectious Diseases Unit, Institut Pasteur, Paris, France.
Fanny KoethFunctional Genetics of Infectious Diseases Unit, Institut Pasteur, Paris, France.
Marina PenovaFunctional Genetics of Infectious Diseases Unit, Institut Pasteur, Paris, France.
Kanchana TangnararatchakitDepartment of Pediatrics, Faculty of Medicine, Ramathibodi Hospital, Mahidol University, Bangkok, Thailand.
Chiea Chuen KhorGenome Institute of Singapore, A-STAR, Singapore, Singapore.
Richard PaulFunctional Genetics of Infectious Diseases Unit, Institut Pasteur, Paris, France.
Prida MalasitDengue Hemorrhagic Fever Research Unit, Office for Research and Development, Siriraj Hospital, Faculty of Medicine, Mahidol University, Bangkok, Thailand.
Fumihiko MatsudaPasteur Kyoto International Joint Research Unit for Integrative Vaccinomics, Kyoto, Japan.
Etienne Simon-LorièreFunctional Genetics of Infectious Diseases Unit, Institut Pasteur, Paris, France.
Prapat SuriyapholBioinformatics and Data Management for Research, Office for Research and Development, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand.
Luisa Pereirai3S-Instituto de Investigação e Inovação em Saúde, Universidade do Porto, Porto, Portugal.ORCID 0000-0002-4271-1527
Anavaj SakuntabhaiFunctional Genetics of Infectious Diseases Unit, Institut Pasteur, Paris, France.
Institut Pasteur · FRUniversidade do Porto · PTCentre National de la Recherche Scientifique · FRMahidol University · THSiriraj Hospital · THAgency for Science, Technology and Research · SGKyoto University · JPNational Science and Technology Development Agency · TH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ethnic diversity has been long considered as one of the factors explaining why the severe forms of dengue are more prevalent in Southeast Asia than anywhere else. Here we take advantage of the admixed profile of Southeast Asians to perform coupled association-admixture analyses in Thai cohorts. For dengue shock syndrome (DSS), the significant haplotypes are located in genes coding for phospholipase C members (PLCB4 added to previously reported PLCE1), related to inflammation of blood vessels. For dengue fever (DF), we found evidence of significant association with CHST10, AHRR, PPP2R5E and GRIP1 genes, which participate in the xenobiotic metabolism signaling pathway. We conducted functional analyses for PPP2R5E, revealing by immunofluorescence imaging that the coded protein co-localizes with both DENV1 and DENV2 NS5 proteins. Interestingly, only DENV2-NS5 migrated to the nucleus, and a deletion of the predicted top-linking motif in NS5 abolished the nuclear transfer. These observations support the existence of differences between serotypes in their cellular dynamics, which may contribute to differential infection outcome risk. The contribution of the identified genes to the genetic risk render Southeast and Northeast Asian populations more susceptible to both phenotypes, while African populations are best protected against DSS and intermediately protected against DF, and Europeans the best protected against DF but the most susceptible against DSS.

Indexed as

Genome-Wide Association StudyAdolescentAdultAsian PeopleAsia, SoutheasternBasic Helix-Loop-Helix ProteinsCarbohydrate SulfotransferasesCarrier ProteinsCell LineCell NucleusChild, PreschoolCohort StudiesDengueDengue VirusFemaleGene ExpressionAHRR protein, humanBasic Helix-Loop-Helix ProteinsCarbohydrate SulfotransferasesCarrier ProteinsCHST10 protein, humanGRIP1 protein, humanNerve Tissue ProteinsNS5 protein, dengue virusPPP2R5E protein, humanProtein Phosphatase 2Repressor ProteinsSulfotransferasesType C PhospholipasesViral Nonstructural ProteinsViral Proteins

Identifiers

PMID29447178
PMCPMC5813895
OpenAlexW2786876903

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.