Evidence map›Paper›PMID 29446199›Full record

ArticleChembiochem : a European journal of chemical biology2018

Light-Dependent Cytoplasmic Recruitment Enhances the Dynamic Range of a Nuclear Import Photoswitch.

Hayretin Yumerefendi, Hui Wang, Daniel J Dickinson, Andrew M Lerner, Per Malkus, Bob Goldstein, Klaus Hahn, Brian Kuhlman

Abstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Design and engineering of light-sensitive protein switches.Current opinion in structural biology · 2022
    Review
  6. Review
  7. Article
  8. Article
  9. Engineering Optogenetic Protein Analogs.Methods in molecular biology (Clifton, N.J.) · 2020
    Article
  10. Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Hayretin YumerefendiUniversity of North Carolina at Chapel Hill, Department of Biochemistry and Biophysics, Campus Box #7260, 120 Mason Farm Road, Suite 3010, Chapel Hill, NC, 27599-7260, USA.
Hui WangUniversity of North Carolina at Chapel Hill, Department of Pharmacology, Campus Box #7260, 120 Mason Farm Road, Suite 4010, Chapel Hill, NC, 27599-7260, USA.
Daniel J DickinsonUniversity of North Carolina at Chapel Hill, Department of Biology, Campus Box #7260, 120 Mason Farm Road, Suite 3010, Chapel Hill, NC, 27599-7260, USA.
Andrew M LernerUniversity of North Carolina at Chapel Hill, Department of Biochemistry and Biophysics, Campus Box #7260, 120 Mason Farm Road, Suite 3010, Chapel Hill, NC, 27599-7260, USA.
Per MalkusUniversity of North Carolina at Chapel Hill, Department of Biochemistry and Biophysics, Campus Box #7260, 120 Mason Farm Road, Suite 3010, Chapel Hill, NC, 27599-7260, USA.
Bob GoldsteinUniversity of North Carolina at Chapel Hill, Department of Biology, Campus Box #7260, 120 Mason Farm Road, Suite 3010, Chapel Hill, NC, 27599-7260, USA.
Klaus HahnUniversity of North Carolina at Chapel Hill, Department of Pharmacology, Campus Box #7260, 120 Mason Farm Road, Suite 4010, Chapel Hill, NC, 27599-7260, USA.
Brian KuhlmanUniversity of North Carolina at Chapel Hill, Department of Biochemistry and Biophysics, Campus Box #7260, 120 Mason Farm Road, Suite 3010, Chapel Hill, NC, 27599-7260, USA.ORCID 0000-0003-4907-9699
University of North Carolina at Chapel Hill · US

Funding

INTERACTIVE GRAPHICS FOR MOLECULAR STUDIES &MICROSCOPYP41EB002025 · NIBIB · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SUPERFINE, RICHARD · 2003 to 2019
$16.9M
Mechanisms of C. elegans GastrulationR01GM083071 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI GOLDSTEIN, ROBERT P · 2008 to 2019
$3.7M
Spatiotemporal Control of the Epigenome via Photoactivatable Nuclear LocalizationR01DA036877 · NIDA · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HAHN, KLAUS M., KUHLMAN, BRIAN A · 2013 to 2017
$2.1M
Biochemical Basis of Cell Polarization by the PAR Protein SystemR00GM115964 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI DICKINSON, DANIEL J · 2018 to 2020
$747k
Biochemical Basis of Cell Polarization by the PAR Protein SystemK99GM115964 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DICKINSON, DANIEL J · 2015 to 2016
$180k
Howard Hughes Medical InstituteNIBIB NIH HHS P41 EB002025NIDA NIH HHS R01 DA036877NIGMS NIH HHS K99 GM115964NIGMS NIH HHS R00 GM115964NIGMS NIH HHS R01 GM083071
6 · The paper itself

Abstract

Cellular signal transduction is often regulated at multiple steps to achieve more complex logic or precise control of a pathway. For instance, some signaling mechanisms couple allosteric activation with localization to achieve high signal to noise. Here, we create a system for light-activated nuclear import that incorporates two levels of control. It consists of a nuclear import photoswitch, light-activated nuclear shuttle (LANS), and a protein engineered to preferentially interact with LANS in the dark, Zdk2. First, Zdk2 is tethered to a location in the cytoplasm that sequesters LANS in the dark. Second, LANS incorporates a nuclear localization signal (NLS) that is sterically blocked from binding to the nuclear import machinery in the dark. If activated with light, LANS both dissociates from its tethered location and exposes its NLS, which leads to nuclear accumulation. We demonstrate that this coupled system improves the dynamic range of LANS in mammalian cells, yeast, and Caenorhabditis elegans and provides tighter control of transcription factors that have been fused to LANS.

Indexed as

Active Transport, Cell NucleusAnimalsCaenorhabditis elegansHEK293 CellsHeLa CellsHumansLightNuclear Localization SignalsOptogeneticsProtein EngineeringProteinsNuclear Localization SignalsProteinslight-activated nuclear shuttlesoptogeneticsphotoswitchesprotein engineeringsignal transduction

Identifiers

PMID29446199
PMCPMC6013380
OpenAlexW2808791310

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.