Evidence map›Paper›PMID 29446002›Full record

ArticleVeterinary research communications2018

Genomic characterization of the first oral avian papillomavirus in a colony of breeding canaries (Serinus canaria).

Daniel A Truchado, Michaël A J Moens, Sergio Callejas, Javier Pérez-Tris, Laura Benítez

Abstract read
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In one paragraph

Article in Veterinary research communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 2 countries.

Daniel A TruchadoDepartamento de Biodiversidad, Ecología y Evolución, Facultad de Biología, Universidad Complutense de Madrid, Calle José Antonio Novais 12, 28040, Madrid, Spain. danieltr@ucm.es.ORCID http://orcid.org/0000-0003-0448-0112
Michaël A J MoensFundación de Conservación Jocotoco, Lizardo García E9-104 y Andrés Xaura, 170143, Quito, Ecuador.
Sergio CallejasUnidad de Genómica, Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Calle Melchor Fernández Almagro, 3, 28029, Madrid, Spain.
Javier Pérez-TrisDepartamento de Biodiversidad, Ecología y Evolución, Facultad de Biología, Universidad Complutense de Madrid, Calle José Antonio Novais 12, 28040, Madrid, Spain.
Laura BenítezDepartamento de Fisiología, Genética y Microbiología, Facultad de Biología, Calle José Antonio Novais 12, 28040, Madrid, Spain.
Universidad Complutense de Madrid · ESConocoPhillips (United States) · USInstituto de Biología Funcional y Genómica · ESSpanish National Centre for Cardiovascular Research · ES

Funding

Ministerio de Economía y Competitividad CGL2013-41642-P/BOSUniversidad Complutense de Madrid CT27/16-CT28/16
6 · The paper itself

Abstract

Papillomaviruses are non-enveloped, DNA viruses that infect skin and mucosa of a wide variety of vertebrates, causing neoplasias or simply persisting asymptomatically. Avian papillomaviruses, with six fully sequenced genomes, are the second most studied group after mammalian papillomaviruses. In this study, we describe the first oral avian papillomavirus, detected in the tongue of a dead Yorkshire canary (Serinus canaria) and in oral swabs of the same bird and other two live canaries from an aviary in Madrid, Spain. Its genome is 8,071 bp and presents the canonical papillomavirus architecture with six early (E6, E7, E1, E9, E2, E4) and two late open reading frames (L1 and L2) and a long control region between L1 and E6. This new avian papillomavirus L1 gene shares a 64% pairwise identity with FcPV1 L1, so it has been classified as a new species (ScPV1) within the Ethapapillomavirus genus. Although the canary died after showing breathing problems, there is no evidence that the papillomavirus caused those symptoms so it could be part of the oral microbiota of the birds. Hence, future investigations are needed to evaluate the clinical relevance of the virus.

Indexed as

CanariesAnimalsBird DiseasesDNA, ViralGenome, ViralMouthPapillomaviridaePapillomavirus InfectionsSequence Homology, Nucleic AcidSpainSpecies SpecificityDNA, ViralAvian papillomavirusAviaryCanaryOralScPV1

Identifiers

PMID29446002
OpenAlexW2793585210

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.