Evidence map›Paper›PMID 29445424›Full record

ArticleClinical epigenetics2018

Promoter methylation of DNA damage repair (DDR) genes in human tumor entities:

Jolein Mijnes, Jürgen Veeck, Nadine T Gaisa, Eduard Burghardt, Tim C de Ruijter, Sonja Gostek, Edgar Dahl, David Pfister, Sebastian C Schmid, Ruth Knüchel and 1 more

Open access · goldAbstract read
In one paragraph

Article in Clinical epigenetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
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  7. Article
  8. The role of epigenetic methylations in thyroid Cancer.World journal of surgical oncology · 2024
    Review
  9. Review
  10. Article
  11. Review
  12. Article
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  15. Article
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  18. Detection of Molecular Signatures of Homologous Recombination Deficiency in Bladder Cancer.Clinical cancer research : an official journal of the American Association for Cancer Research · 2021
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Jolein Mijnes *1Institute of Pathology, RWTH Aachen University, Pauwelsstr. 30, 52074 Aachen, Germany.
Jürgen Veeck *1Institute of Pathology, RWTH Aachen University, Pauwelsstr. 30, 52074 Aachen, Germany.
Nadine T Gaisa1Institute of Pathology, RWTH Aachen University, Pauwelsstr. 30, 52074 Aachen, Germany.
Eduard Burghardt1Institute of Pathology, RWTH Aachen University, Pauwelsstr. 30, 52074 Aachen, Germany.
Tim C de Ruijter2Division of Medical Oncology, Maastricht University Medical Centre, Maastricht, The Netherlands.
Sonja Gostek1Institute of Pathology, RWTH Aachen University, Pauwelsstr. 30, 52074 Aachen, Germany.
Edgar Dahl1Institute of Pathology, RWTH Aachen University, Pauwelsstr. 30, 52074 Aachen, Germany.
David Pfister5Department of Urology, RWTH Aachen University, Aachen, Germany.
Sebastian C Schmid7Department of Urology, Klinikum rechts der Isar, Technical University Munich, Munich, Germany.
Ruth Knüchel1Institute of Pathology, RWTH Aachen University, Pauwelsstr. 30, 52074 Aachen, Germany.
Michael Rose1Institute of Pathology, RWTH Aachen University, Pauwelsstr. 30, 52074 Aachen, Germany.ORCID 0000-0002-4340-1117
RWTH Aachen University · DEMaastricht University Medical Centre · NLTUM Klinikum · DEUniversity Hospital Cologne · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Genome-wide studies identified pan-cancer genes and shared biological networks affected by epigenetic dysregulation among diverse tumor entities. Here, we systematically screened for hypermethylation of DNA damage repair (DDR) genes in a comprehensive candidate-approach and exemplarily identify and validate candidate DDR genes as targets of epigenetic inactivation unique to bladder cancer (BLCA), which may serve as non-invasive biomarkers. Methods: Genome-wide DNA methylation datasets (2755 CpG probes of Results: Overall, 39 DDR genes were hypermethylated in human cancers. Most exclusively and frequently methylated (37%) in primary BLCA was Conclusions:

Indexed as

DNA MethylationPromoter Regions, GeneticBiomarkers, TumorCarrier ProteinsCell Line, TumorComputer SimulationDecitabineDNA RepairEndodeoxyribonucleasesEpigenesis, GeneticFemaleGene Expression Regulation, NeoplasticGenome-Wide Association StudyHumansMaleNuclear ProteinsBiomarkers, TumorCarrier ProteinsDecitabineEndodeoxyribonucleasesNuclear ProteinsRBBP8 protein, humanBladder cancer/BLCADNA repairEpigeneticsInfinium HumanMethylation450 BeadChipRBBP8/CtIPUrine biomarker

Identifiers

PMID29445424
PMCPMC5802064
OpenAlexW2796696764

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.