Evidence map›Paper›PMID 29442275›Full record

ArticleDigestive diseases and sciences2018

Five Novel Oncogenic Signatures Could Be Utilized as AFP-Related Diagnostic Biomarkers for Hepatocellular Carcinoma Based on Next-Generation Sequencing.

Zheng Yu, Rongchang Wang, Fan Chen, Jianru Wang, Xiaohui Huang

Abstract read
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In one paragraph

Article in Digestive diseases and sciences, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
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  4. Clinical significance ofJournal of clinical biochemistry and nutrition · 2024
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  18. Upregulation of CENPM promotes hepatocarcinogenesis through mutiple mechanisms.Journal of experimental & clinical cancer research : CR · 2019
    Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Zheng YuLaboratory of Surgery, The First Affiliated Hospital, Sun Yat-Sen University, Guangzhou, 510080, China.
Rongchang WangDepartment of Biliary and Pancreatic Surgery, The First Affiliated Hospital, Sun Yat-Sen University, Guangzhou, 510080, China.
Fan ChenDepartment of Spine Surgery, The First Affiliated Hospital, Sun Yat-Sen University, Guangzhou, 510080, China.
Jianru WangDepartment of Spine Surgery, The First Affiliated Hospital, Sun Yat-Sen University, Guangzhou, 510080, China. zzuwjr@163.com.
Xiaohui HuangLaboratory of Surgery, The First Affiliated Hospital, Sun Yat-Sen University, Guangzhou, 510080, China. 15626020913@163.com.ORCID http://orcid.org/0000-0003-3741-0751
Sun Yat-sen University · CN

Funding

National Natural Science Foundation of China 81072047National Natural Science Foundation of China 81101862National Natural Science Foundation of China 81172079National Natural Science Foundation of China 81201930National Natural Science Foundation of China 81472253National Natural Science Foundation of China 81472258National Natural Science Foundation of China 81572424Natural Science Foundation of Guangdong Province 2014A030313063Project of Guangzhou Municipal Science & Technology Planning 201607010164Project of Guangzhou Municipal Science & Technology Planning 201607010309Science and Technology Planning Project of Guangdong Province 2016A020215047Science and Technology Planning Project of Guangdong Province 2017A020215016
6 · The paper itself

Abstract

backgroundAlpha-fetal protein (AFP) is an important conventional clinical diagnostic indicator of hepatocellular carcinoma (HCC). However, the utilization of AFP alone might yield deceptive results due to its limited sensitivity and accuracy.

aimsOur study was designed to investigate latent diagnostic biomarkers that could function as auxiliary clinical indicators of HCC and enhance the accuracy of joint diagnosis with AFP.

methodsWe analyzed gene expression profiles and clinical data from HCC patients in The Cancer Genome Atlas database. Differentially expressed genes were identified, and a gene set enrichment analysis was conducted to uncover their biological functions and molecular processes. A weighted correlation network analysis and a protein-protein interaction analysis were performed to detect AFP-related biomarkers. The diagnostic performance of these biomarkers was verified using datasets from the GEO database. A diagnostic nomogram was established using the expression levels of potential biomarkers. Quantitative real-time PCR was performed using tissues from 16 HCC patients to validate the results.

resultsFive AFP-related diagnostic biomarkers, CDT1, MCM7, NUDT1, CENPM, and HDAC11, were discovered. The diagnostic performance of these biomarkers and the nomogram were demonstrated to be excellent according to receiver operating characteristic curves. CDT1, MCM7, and NUDT1 were shown to be up-regulated in HCC tissues through quantitative real-time PCR.

conclusionsWe discovered five diagnostic biomarkers and established a nomogram as a complement to AFP in the diagnosis of HCC. Our results provide a more accurate diagnostic plan for HCC patients based on next-generation sequencing compared with AFP alone.

Indexed as

alpha-FetoproteinsBiomarkers, TumorCarcinoma, HepatocellularCell Cycle ProteinsDNA Repair EnzymesFemaleHistone DeacetylasesHumansLiver NeoplasmsMaleMiddle AgedMinichromosome Maintenance Complex Component 7Nuclear ProteinsPhosphoric Monoester HydrolasesReal-Time Polymerase Chain ReactionRNA, Messenger8-oxodGTPasealpha-FetoproteinsBiomarkers, TumorCDT1 protein, humanCell Cycle ProteinsCENPM protein, humanDNA Repair EnzymesHDAC11 protein, humanHistone DeacetylasesMCM7 protein, humanMinichromosome Maintenance Complex Component 7Nuclear ProteinsPhosphoric Monoester HydrolasesRNA, MessengerAFPBiomarkersDiagnosisHepatocellular carcinomaNomogramTCGA

Identifiers

PMID29442275
OpenAlexW2789586107

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.