Evidence map›Paper›PMID 29441050›Full record

ArticleFrontiers in microbiology2018

Comparative Genomics of Completely Sequenced

Michael Schmid, Jonathan Muri, Damianos Melidis, Adithi R Varadarajan, Vincent Somerville, Adrian Wicki, Aline Moser, Marc Bourqui, Claudia Wenzel, Elisabeth Eugster-Meier and 3 more

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Review
  12. Antimicrobial Susceptibility ofFoods (Basel, Switzerland) · 2021
    Article
  13. Genome and Pangenome Analysis ofInternational journal of molecular sciences · 2021
    Article
  14. Niche-specific adaptation ofMicrobial genomics · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Draft Genome Sequences of Six Lactobacillus gasseri and ThreeMicrobiology resource announcements · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Michael SchmidAgroscope, Research Group Molecular Diagnostics, Genomics and Bioinformatics, Wädenswil, Switzerland.
Jonathan MuriAgroscope, Research Group Molecular Diagnostics, Genomics and Bioinformatics, Wädenswil, Switzerland.
Damianos MelidisAgroscope, Research Group Molecular Diagnostics, Genomics and Bioinformatics, Wädenswil, Switzerland.
Adithi R VaradarajanAgroscope, Research Group Molecular Diagnostics, Genomics and Bioinformatics, Wädenswil, Switzerland.
Vincent SomervilleAgroscope, Research Group Molecular Diagnostics, Genomics and Bioinformatics, Wädenswil, Switzerland.
Adrian WickiAgroscope, Research Group Molecular Diagnostics, Genomics and Bioinformatics, Wädenswil, Switzerland.
Aline MoserAgroscope, Research Group Biochemistry of Milk and Microorganisms, Bern, Switzerland.
Marc BourquiAgroscope, Research Group Molecular Diagnostics, Genomics and Bioinformatics, Wädenswil, Switzerland.
Claudia WenzelAgroscope, Research Group Biochemistry of Milk and Microorganisms, Bern, Switzerland.
Elisabeth Eugster-MeierSchool of Agricultural, Forest and Food Sciences HAFL, Bern University of Applied Sciences, Zollikofen, Switzerland.
Juerg E FreyAgroscope, Research Group Molecular Diagnostics, Genomics and Bioinformatics, Wädenswil, Switzerland.
Stefan IrmlerAgroscope, Research Group Biochemistry of Milk and Microorganisms, Bern, Switzerland.
Christian H AhrensAgroscope, Research Group Molecular Diagnostics, Genomics and Bioinformatics, Wädenswil, Switzerland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although complete genome sequences hold particular value for an accurate description of core genomes, the identification of strain-specific genes, and as the optimal basis for functional genomics studies, they are still largely underrepresented in public repositories. Based on an assessment of the genome assembly complexity for all lactobacilli, we used Pacific Biosciences' long read technology to sequence and

Indexed as

comparative genomicsCRISPR/Casdairy industrymetagenomicsnatural whey starter culturesPacBiostrain-specific geneswhole genome sequencing

Identifiers

PMID29441050
PMCPMC5797582

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.