Evidence map›Paper›PMID 29440491›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Cryo-EM structure of the bacterial actin AlfA reveals unique assembly and ATP-binding interactions and the absence of a conserved subdomain.

Gülsima D Usluer, Frank DiMaio, Shun Kai Yang, Jesse M Hansen, Jessica K Polka, R Dyche Mullins, Justin M Kollman

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.0field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Review
  3. The evolution of archaeal flagellar filaments.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  4. Article
  5. Review
  6. The complex simplicity of the bacterial cytoskeleton.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Gülsima D UsluerDepartment of Biochemistry, University of Washington, Seattle, WA 98195.
Frank DiMaioDepartment of Biochemistry, University of Washington, Seattle, WA 98195.ORCID 0000-0002-7524-8938
Shun Kai YangDepartment of Anatomy & Cell Biology, McGill University, Montreal, QC H3A 0C7, Canada.
Jesse M HansenDepartment of Biochemistry, University of Washington, Seattle, WA 98195.
Jessica K PolkaDepartment of Cellular and Molecular Pharmacology, University of California, San Francisico, CA 94158.
R Dyche MullinsDepartment of Cellular and Molecular Pharmacology, University of California, San Francisico, CA 94158.
Justin M KollmanDepartment of Biochemistry, University of Washington, Seattle, WA 98195; jkoll@uw.edu.
University of Washington · USMcGill University · CA

Funding

Assembly and function of cytoskeletal systems in eukaryotic and prokaryoticcellsR35GM118119 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MULLINS, R DYCHE · 2016 to 2025
$4.8M
Protein structure determination from low-resolution experimental dataR01GM123089 · NIGMS · UNIVERSITY OF WASHINGTON · PI DIMAIO, FRANK P · 2017 to 2025
$2.6M
CIHR 298465NIGMS NIH HHS R01 GM123089NIGMS NIH HHS R35 GM118119
6 · The paper itself

Abstract

Bacterial actins are an evolutionarily diverse family of ATP-dependent filaments built from protomers with a conserved structural fold. Actin-based segregation systems are encoded on many bacterial plasmids and function to partition plasmids into daughter cells. The bacterial actin AlfA segregates plasmids by a mechanism distinct from other partition systems, dependent on its unique dynamic properties. Here, we report the near-atomic resolution electron cryo-microscopy structure of the AlfA filament, which reveals a strikingly divergent filament architecture resulting from the loss of a subdomain conserved in all other actins and a mode of ATP binding. Its unusual assembly interfaces and nucleotide interactions provide insight into AlfA dynamics, and expand the range of evolutionary variation accessible to actin quaternary structure.

Indexed as

ActinsAdenosine TriphosphateAmino Acid SequenceBacterial ProteinsCryoelectron MicroscopyCrystallography, X-RayCytoskeletonModels, MolecularProtein DomainsSequence HomologyActinsAdenosine TriphosphateBacterial Proteinsbacterial actincryo-EMcytoskeletonplasmid segregation

Identifiers

PMID29440491
PMCPMC5879662
OpenAlexW2750644459

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.