Evidence map›Paper›PMID 29440447›Full record

ArticleMolecular cancer research : MCR2018

A Human Genome-Wide RNAi Screen Reveals Diverse Modulators that Mediate IRE1α-XBP1 Activation.

Zhifen Yang, Jing Zhang, Dadi Jiang, Purvesh Khatri, David E Solow-Cordero, Diego A S Toesca, Constantinos Koumenis, Nicholas C Denko, Amato J Giaccia, Quynh-Thu Le and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cancer research : MCR, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.4field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Zhifen Yang *Department of Radiation Oncology, Stanford University, Stanford, California.
Jing Zhang *Department of Radiation Oncology, Stanford University, Stanford, California.
Dadi JiangDepartment of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas.
Purvesh KhatriInstitute for Immunity, Transplantation and Infection, and Biomedical Informatics Research, Department of Medicine, Stanford University, Stanford, California.
David E Solow-CorderoHigh-Throughput Bioscience Center, Department of Chemical and Systems Biology, Stanford University, Stanford, California.
Diego A S ToescaDepartment of Radiation Oncology, Stanford University, Stanford, California.
Constantinos KoumenisDepartment of Radiation Oncology, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania.
Nicholas C DenkoDepartment of Radiation Oncology, The Ohio State University, Columbus, Ohio.
Amato J GiacciaDepartment of Radiation Oncology, Stanford University, Stanford, California.
Quynh-Thu LeDepartment of Radiation Oncology, Stanford University, Stanford, California.
Albert C KoongDepartment of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas. akoong@mdanderson.org.
University of Pennsylvania · US

Funding

Translational Therapeutics Research Program (TT)P30CA016058 · NCI · OHIO STATE UNIVERSITY · PI Tasleem J Padamsee · 1985 to 2026
$132.3M
Translational Oncology Research Program (Project-005)P30CA124435 · NCI · STANFORD UNIVERSITY · PI Melinda L. Telli · 2007 to 2026
$71.4M
POSTDOCTORAL TRAINING IN MEDICAL INFORMATION SCIENCEST15LM007033 · NLM · STANFORD UNIVERSITY · PI SYLVIA KATINA PLEVRITIS · 1985 to 2026
$25.5M
TUMOR HYPOXIA--MOLECULAR STUDIES &CLINICAL EXPLOITATIONP01CA067166 · NCI · STANFORD UNIVERSITY · PI LE, QUYNH-THU XUAN · 1996 to 2017
$25.5M
Targeting Galectin-1 with radiation in lung cancerR01CA161585 · NCI · STANFORD UNIVERSITY · PI KOONG, ALBERT, LE, QUYNH-THU XUAN · 2012 to 2016
$1.6M
Upgraded High-Content and High-Throughput siRNA Screening SystemS10RR026338 · NCRR · STANFORD UNIVERSITY · PI SOLOW-CORDERO, DAVID EDWARD · 2010 to 2010
$498k
NCI NIH HHS P01 CA067166NCI NIH HHS P30 CA016058NCI NIH HHS P30 CA124435NCI NIH HHS R01 CA161585NCRR NIH HHS S10 RR026338NLM NIH HHS T15 LM007033
6 · The paper itself

Abstract

Activation of the unfolded protein response (UPR) signaling pathways is linked to multiple human diseases, including cancer. The inositol-requiring kinase 1α (IRE1α)-X-box binding protein 1 (XBP1) pathway is the most evolutionarily conserved of the three major signaling branches of the UPR. Here, we performed a genome-wide siRNA screen to obtain a systematic assessment of genes integrated in the IRE1α-XBP1 axis. We monitored the expression of an XBP1-luciferase chimeric protein in which luciferase was fused in-frame with the spliced (active) form of XBP1. Using cells expressing this reporter construct, we identified 162 genes for which siRNA inhibition resulted in alteration in XBP1 splicing. These genes express diverse types of proteins modulating a wide range of cellular processes. Pathway analysis identified a set of genes implicated in the pathogenesis of breast cancer. Several genes, including

Indexed as

Genome, HumanHumansRNA InterferenceTransfectionX-Box Binding Protein 1X-Box Binding Protein 1XBP1 protein, human

Identifiers

PMID29440447
PMCPMC5932228
OpenAlexW2788462611

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.