Evidence map›Paper›PMID 29440259›Full record

ArticleGenes & development2018

Three-step transcriptional priming that drives the commitment of multipotent progenitors toward B cells.

Tomohiro Miyai, Junichiro Takano, Takaho A Endo, Eiryo Kawakami, Yasutoshi Agata, Yasutaka Motomura, Masato Kubo, Yukie Kashima, Yutaka Suzuki, Hiroshi Kawamoto and 1 more

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 35 citations in OpenAlex.

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  14. CHD4 is essential for transcriptional repression and lineage progression in B lymphopoiesis.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  15. Article
  16. Review
  17. Epigenetic Priming in Immunodeficiencies.Frontiers in cell and developmental biology · 2019
    Review
  18. Review
  19. Review
  20. Molecular Regulation of Differentiation in Early B-Lymphocyte Development.International journal of molecular sciences · 2018
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 1 country.

Tomohiro MiyaiLaboratory for Immune Regeneration, RIKEN Center for Integrative Medical Sciences, Yokohama 230-0045, Japan.
Junichiro TakanoLaboratory for Immune Regeneration, RIKEN Center for Integrative Medical Sciences, Yokohama 230-0045, Japan.
Takaho A EndoLaboratory for Integrative Genomics, RIKEN Center for Integrative Medical Sciences, Yokohama 230-0045, Japan.
Eiryo KawakamiLaboratory for Disease Systems Modeling, RIKEN Center for Integrative Medical Sciences, Yokohama 230-0045, Japan.
Yasutoshi AgataDepartment of Biochemistry and Molecular Biology, Shiga University of Medical School, Shiga 520-2192, Japan.
Yasutaka MotomuraDivision of Molecular Pathology, Research Institute for Biomedical Science, Tokyo University of Science, Noda 278-0022, Japan.
Masato KuboDivision of Molecular Pathology, Research Institute for Biomedical Science, Tokyo University of Science, Noda 278-0022, Japan.
Yukie KashimaLaboratory of Systems Genomics, Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, University of Tokyo, Chiba 272-8562, Japan.
Yutaka SuzukiLaboratory of Systems Genomics, Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, University of Tokyo, Chiba 272-8562, Japan.
Hiroshi KawamotoDepartment of Immunology, Institute for Frontier Medical Sciences, Kyoto University, Kyoto 606-8507, Japan.
Tomokatsu IkawaLaboratory for Immune Regeneration, RIKEN Center for Integrative Medical Sciences, Yokohama 230-0045, Japan.
RIKEN Center for Integrative Medical Sciences · JPChiba University · JPTokyo University of Science · JPKyoto University · JPShiga University · JPThe University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Stem cell fate is orchestrated by core transcription factors (TFs) and epigenetic modifications. Although regulatory genes that control cell type specification are identified, the transcriptional circuit and the cross-talk among regulatory factors during cell fate decisions remain poorly understood. To identify the "time-lapse" TF networks during B-lineage commitment, we used multipotent progenitors harboring a tamoxifen-inducible form of Id3, an in vitro system in which virtually all cells became B cells within 6 d by simply withdrawing 4-hydroxytamoxifen (4-OHT). Transcriptome and epigenome analysis at multiple time points revealed that ∼10%-30% of differentially expressed genes were virtually controlled by the core TFs, including E2A, EBF1, and PAX5. Strikingly, we found unexpected transcriptional priming before the onset of the key TF program. Inhibition of the immediate early genes such as

Indexed as

Transcription, GeneticAnimalsBasic Helix-Loop-Helix ProteinsB-LymphocytesCell LineageCells, CulturedEpigenesis, GeneticGene Expression ProfilingGene Regulatory NetworksHistone CodeKruppel-Like Factor 4MiceMice, CongenicMice, Inbred C57BLMice, KnockoutMultipotent Stem CellsBasic Helix-Loop-Helix ProteinsEbf1 protein, mouseKlf4 protein, mouseKruppel-Like Factor 4Pax5 protein, mousePAX5 Transcription FactorTcf3 protein, mouseTrans-ActivatorsB-cell differentiationepigeneticslineage commitmentsingle-cell RNA-seqtranscriptional networktranscription factor

Identifiers

PMID29440259
PMCPMC5830925
OpenAlexW2786450858

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.