Evidence map›Paper›PMID 29439692›Full record

ArticleBMC pulmonary medicine2018

Automated chart review utilizing natural language processing algorithm for asthma predictive index.

Harsheen Kaur, Sunghwan Sohn, Chung-Il Wi, Euijung Ryu, Miguel A Park, Kay Bachman, Hirohito Kita, Ivana Croghan, Jose A Castro-Rodriguez, Gretchen A Voge and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC pulmonary medicine, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed, 2 pooled it
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 2 syntheses or guidelines pooled it, 79 citations in OpenAlex.

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  10. AI model for predicting asthma prognosis in children.The journal of allergy and clinical immunology. Global · 2025
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  11. Association of delayed asthma diagnosis with asthma exacerbations in children.The journal of allergy and clinical immunology. Global · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Harsheen KaurDepartment of Pediatric and Adolescent Medicine, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA.
Sunghwan SohnDivision of Biomedical Statistics and Informatics, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA.
Chung-Il WiDepartment of Pediatric and Adolescent Medicine, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA.
Euijung RyuAsthma Epidemiology Research Unit, Mayo Clinic, Rochester, MN, USA.
Miguel A ParkDivision of Allergic Disease, Mayo Clinic, Rochester, MN, USA.
Kay BachmanDivision of Allergic Disease, Mayo Clinic, Rochester, MN, USA.
Hirohito KitaDivision of Allergic Disease, Mayo Clinic, Rochester, MN, USA.
Ivana CroghanDepartment of Medicine Research, Mayo Clinic, Rochester, MN, USA.
Jose A Castro-RodriguezDivision of Pediatrics, School of Medicine, Pontificia Universidad Catolica de Chile, Santiago, Chile.
Gretchen A VogeDepartment of Pediatric and Adolescent Medicine, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA.
Hongfang LiuDivision of Biomedical Statistics and Informatics, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA. liu.hongfang@mayo.edu.
Young J JuhnDepartment of Pediatric and Adolescent Medicine, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA. juhn.young@mayo.edu.
Mayo Clinic in Florida · USMayo Clinic · USPontificia Universidad Católica de Chile · CLUniversity of New Mexico · US

Funding

Rochester Epidemiology ProjectR01AG034676 · NIA · MAYO CLINIC ROCHESTER · PI ROCCA, WALTER A, ST SAUVER, JENNIFER LYNN · 2010 to 2019
$9.5M
Identification and characterization of children with asthma-associated comorbidities through computational and immune phenotypingR01HL126667 · NHLBI · MAYO CLINIC ROCHESTER · PI JUHN, YOUNG J, LIU, HONGFANG · 2015 to 2022
$4.3M
Enhanced Ascertainment of Asthma Status Via Natural Language ProcessingR21AI116839 · NIAID · MAYO CLINIC ROCHESTER · PI JUHN, YOUNG J, WU, STEPHEN TZE-INN · 2015 to 2016
$437k
National Heart, Lung, and Blood Institute R01 HL126667National Institute on Aging R01 AG034676NHLBI NIH HHS R01 HL126667NIAID NIH HHS R21 AI116839NIA NIH HHS R01 AG034676
6 · The paper itself

Abstract

backgroundThus far, no algorithms have been developed to automatically extract patients who meet Asthma Predictive Index (API) criteria from the Electronic health records (EHR) yet. Our objective is to develop and validate a natural language processing (NLP) algorithm to identify patients that meet API criteria.

methodsThis is a cross-sectional study nested in a birth cohort study in Olmsted County, MN. Asthma status ascertained by manual chart review based on API criteria served as gold standard. NLP-API was developed on a training cohort (n = 87) and validated on a test cohort (n = 427). Criterion validity was measured by sensitivity, specificity, positive predictive value and negative predictive value of the NLP algorithm against manual chart review for asthma status. Construct validity was determined by associations of asthma status defined by NLP-API with known risk factors for asthma.

resultsAmong the eligible 427 subjects of the test cohort, 48% were males and 74% were White. Median age was 5.3 years (interquartile range 3.6-6.8). 35 (8%) had a history of asthma by NLP-API vs. 36 (8%) by abstractor with 31 by both approaches. NLP-API predicted asthma status with sensitivity 86%, specificity 98%, positive predictive value 88%, negative predictive value 98%. Asthma status by both NLP and manual chart review were significantly associated with the known asthma risk factors, such as history of allergic rhinitis, eczema, family history of asthma, and maternal history of smoking during pregnancy (p value < 0.05). Maternal smoking [odds ratio: 4.4, 95% confidence interval 1.8-10.7] was associated with asthma status determined by NLP-API and abstractor, and the effect sizes were similar between the reviews with 4.4 vs 4.2 respectively.

conclusionNLP-API was able to ascertain asthma status in children mining from EHR and has a potential to enhance asthma care and research through population management and large-scale studies when identifying children who meet API criteria.

Indexed as

AsthmaElectronic Health RecordsNatural Language ProcessingAlgorithmsAutomationChildChild, PreschoolCross-Sectional StudiesData MiningFemaleHumansMaleReproducibility of ResultsAPIAsthmaEpidemiologyInformaticsNLP

Identifiers

PMID29439692
PMCPMC5812028
OpenAlexW2795028690

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.