Evidence map›Paper›PMID 29439385›Full record

ArticleViruses2018

ALV Integration-Associated Hypomethylation at the TERT Promoter Locus.

Gary Lam, Karen Beemon

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.1field-weighted citation impact, top 54% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. The ageing virus hypothesis: Epigenetic ageing beyond the Tree of Life.BioEssays : news and reviews in molecular, cellular and developmental biology · 2025
    Review
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Gary LamDepartment of Biology, Johns Hopkins University, Baltimore MD 21218, USA. glam5@jhu.edu.
Karen BeemonDepartment of Biology, Johns Hopkins University, Baltimore MD 21218, USA. KLB@jhu.edu.
Johns Hopkins University · US

Funding

CELLULAR AND MOLECULAR BIOLOGYT32GM007231 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI VAN DOREN, MARK B · 1985 to 2020
$18.4M
Oncogenes and oncogenic microRNAs in chicken tumorsR01CA124596 · NCI · JOHNS HOPKINS UNIVERSITY · PI BEEMON, KAREN L. · 2008 to 2012
$1.7M
Acquisition of Sony Biotechnology iCyt Synergy SY3200 BSC Cell SorterS10OD016230 · OD · JOHNS HOPKINS UNIVERSITY · PI MCCAFFERY, J. MICHAEL · 2014 to 2014
$520k
Cellular Factors that regulate avain leukosis virus DNA integrationR21AI128353 · NIAID · JOHNS HOPKINS UNIVERSITY · PI BEEMON, KAREN L. · 2017 to 2018
$437k
NCI NIH HHS R01 CA124596NIAID NIH HHS R21 AI128353NIGMS NIH HHS T32 GM007231NIH HHS S10 OD016230
6 · The paper itself

Abstract

Avian leukosis virus (ALV) is a simple retrovirus that can induce B-cell lymphoma in chicken(s) and other birds by insertional mutagenesis. The promoter region of telomerase reverse transcriptase (TERT) has been identified as an important integration site for tumorigenesis. Tumors with TERT promoter integrations are associated with increased TERT expression. The mechanism of this activation is still under investigation. We asked whether insertion of proviral DNA perturbs the epigenome of the integration site and, subsequently, impacts the regulation of neighboring genes. DNA cytosine methylation, which generally acts to suppress transcription, is one major form of epigenetic regulation. In this study, we examine allele-specific methylation patterns of genomic DNA from chicken tumors by bisulfite sequencing. We observed that alleles with TERT promoter integrations are associated with decreased methylation in the host genome near the site of integration. Our observations suggest that insertion of ALV in the TERT promoter region may induce expression of TERT through inhibition of maintenance methylation in the TERT promoter region.

Indexed as

DNA MethylationPromoter Regions, GeneticVirus IntegrationAllelesAnimalsAvian Leukosis VirusCell LineChick EmbryoCpG IslandsEpigenesis, GeneticProvirusesTelomeraseTerminal Repeat SequencesTranscription Initiation SiteTelomeraseALVcancerDNA methylationTERTviral integration

Identifiers

PMID29439385
PMCPMC5850381
OpenAlexW2793548086

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.