Evidence map›Paper›PMID 29439026›Full record

ArticleScience (New York, N.Y.)2018

Rev-erbα dynamically modulates chromatin looping to control circadian gene transcription.

Yong Hoon Kim, Sajid A Marhon, Yuxiang Zhang, David J Steger, Kyoung-Jae Won, Mitchell A Lazar

Open access · bronzeAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 133 papers.

0numbers the graph read from it
0cells of the map it votes in
133citing papers in PubMed
11.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

133 citing papers in PubMed, 214 citations in OpenAlex.

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  13. Review
  14. Negative regulation of TbioRxiv : the preprint server for biology · 2026
    Article
  15. Review
  16. Article
  17. Review
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  20. Review

73 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Yong Hoon KimInstitute for Diabetes, Obesity, and Metabolism, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104, USA.ORCID 0000-0002-0872-4244
Sajid A MarhonInstitute for Diabetes, Obesity, and Metabolism, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104, USA.ORCID 0000-0002-1046-9852
Yuxiang ZhangInstitute for Diabetes, Obesity, and Metabolism, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104, USA.ORCID 0000-0002-6593-6753
David J StegerInstitute for Diabetes, Obesity, and Metabolism, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104, USA.ORCID 0000-0003-1610-7024
Kyoung-Jae WonInstitute for Diabetes, Obesity, and Metabolism, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104, USA. wonk@pennmedicine.upenn.edu lazar@pennmedicine.upenn.edu.ORCID 0000-0002-2924-9630
Mitchell A LazarInstitute for Diabetes, Obesity, and Metabolism, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104, USA. wonk@pennmedicine.upenn.edu lazar@pennmedicine.upenn.edu.ORCID 0000-0001-8653-1280
University of Pennsylvania · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007170 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI BRASS, LAWRENCE F · 1985 to 2022
$54.0M
VIRAL VECTOR COREP30DK019525 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI MITCHELL A. LAZAR · 1986 to 2026
$48.3M
TRANSGENIC AND CHIMERIC MOUSE COREP30DK050306 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI Ken Hashigiwa Cadwell · 1997 to 2026
$32.5M
ZINC FINGER PROTEINS IN EARLY KIDNEY DEVELOPMENTP01DK049210 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI AHIMA, REXFORD S. · 1995 to 2016
$26.9M
REV-ERB Nuclear Receptors in Circadian Rhythm and MetabolismR01DK045586 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI MITCHELL A. LAZAR · 1992 to 2026
$12.0M
PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM008216 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI EPSTEIN, DOUGLAS J · 1987 to 2023
$8.3M
VANADIUM INTERACTION STUDIES IN RELATION TO THE INHIBITION OF NA+-K+-ATPASES06GM008216 · NIGMS · UNIVERSITY OF PUERTO RICO AT HUMACAO · PI ALEGRIA, ANTONIO E · 1989 to 2010
$8.0M
Tracing transcriptomic changes to uncover unknown roles of TZDsR01DK106027 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI SEALE, PATRICK, WON, KYOUNG JAE · 2015 to 2019
$1.7M
The identification and characterization of a novel circadian ETS factorF30DK112507 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI KIM, YONG HOON · 2016 to 2016
$49k
NIDDK NIH HHS F30 DK112507NIDDK NIH HHS P01 DK049210NIDDK NIH HHS P30 DK019525NIDDK NIH HHS P30 DK050306NIDDK NIH HHS R01 DK045586NIDDK NIH HHS R01 DK106027NIGMS NIH HHS S06 GM008216NIGMS NIH HHS T32 GM007170NIGMS NIH HHS T32 GM008216
6 · The paper itself

Abstract

Mammalian physiology exhibits 24-hour cyclicity due to circadian rhythms of gene expression controlled by transcription factors that constitute molecular clocks. Core clock transcription factors bind to the genome at enhancer sequences to regulate circadian gene expression, but not all binding sites are equally functional. We found that in mice, circadian gene expression in the liver is controlled by rhythmic chromatin interactions between enhancers and promoters. Rev-erbα, a core repressive transcription factor of the clock, opposes functional loop formation between Rev-erbα-regulated enhancers and circadian target gene promoters by recruitment of the NCoR-HDAC3 co-repressor complex, histone deacetylation, and eviction of the elongation factor BRD4 and the looping factor MED1. Thus, a repressive arm of the molecular clock operates by rhythmically modulating chromatin loops to control circadian gene transcription.

Indexed as

Gene Expression RegulationTranscription, GeneticAcetylationAnimalsBromodomain Containing ProteinsChromatinCircadian RhythmEnhancer Elements, GeneticHistone Deacetylase 3Histone DeacetylasesLiverMaleMediator Complex Subunit 1MiceMice, KnockoutNuclear ProteinsBrd4 protein, mouseBromodomain Containing ProteinsChromatinHistone Deacetylase 3Histone DeacetylasesMed1 protein, mouseMediator Complex Subunit 1Ncor1 protein, mouseNr1d1 protein, mouseNuclear ProteinsNuclear Receptor Co-Repressor 1Nuclear Receptor Subfamily 1, Group D, Member 1Transcription Factors

Identifiers

PMID29439026
PMCPMC5995144
OpenAlexW2786541194

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.