ReviewMolecules (Basel, Switzerland)2018
Mining and Development of Novel SSR Markers Using Next Generation Sequencing (NGS) Data in Plants.
Review in Molecules (Basel, Switzerland), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.
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Who cites it
78 citing papers in PubMed.
- Chloroplast genome characterization of Adenophora taquetii and comparative analysis with related Adenophora species.Genes & genomics · 2026Article
- Development of Genomic SSR Markers to Reveal the Genetic Diversity in Trichosanthes kirilowii from Korea.Molecular biotechnology · 2026Article
- Chloroplast genome comparison of Valeriana species with sequence variation, selective pressure, and divergence analysis.PloS one · 2026Article
- A novel EST-SSR fingerprint database development strategy for accurate identification of asparagus cultivars.BMC plant biology · 2025Article
- Genetic and genomic resources for turfgrasses: status, applications, and prospects.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Review
- Genome Survey Sequencing ofGenes · 2025Article
- Simple sequence repeats and their expansions: role in plant development, environmental response and adaptation.The New phytologist · 2025Review
- Comparative and evolutionary analysis of chloroplast genomes from five rare Styrax species.BMC genomics · 2025Article
- Genetic Assessment in the Andean Tropical FruitsPlants (Basel, Switzerland) · 2025Article
- Genetic Diversity Assessment and Core Germplasm Screening of Blackcurrant (International journal of molecular sciences · 2025Article
- First3 Biotech · 2025Article
- Article
- Development of a diagnostic variable number tandem repeat marker and dual TaqMan genotyping assay to distinguish Lophophora species.International journal of legal medicine · 2025Article
- From Species to Varieties: How Modern Sequencing Technologies Are Shaping Medicinal Plant Identification.Genes · 2024Review
- Genetic relationship analysis and core collection construction of Eucalyptus grandis from Dongmen improved variety base: the largest eucalypt germplasm resource in China.BMC plant biology · 2024Article
- Genome-wide identification of SSR markers from coding regions for endangered Argania spinosa L. skeels and construction of SSR database: AsSSRdb.Database : the journal of biological databases and curation · 2024Article
- Genome-Wide Development and Characterization of Microsatellite Markers in the Great Web-Spinning SawflyEcology and evolution · 2024Article
- Assessing Genetic Diversity in Endangered PlantInternational journal of molecular sciences · 2024Article
- Genetic Diversity Analysis and Fingerprint Construction for 87 Passionfruit (International journal of molecular sciences · 2024Article
- Genome-Wide Characterization and Development of Simple Sequence Repeat Markers for Molecular Diversity Analyses in Yellowhorn (Plants (Basel, Switzerland) · 2024Article
18 more citing papers are in PubMed but not listed here.
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Microsatellites, or simple sequence repeats (SSRs), are one of the most informative and multi-purpose genetic markers exploited in plant functional genomics. However, the discovery of SSRs and development using traditional methods are laborious, time-consuming, and costly. Recently, the availability of high-throughput sequencing technologies has enabled researchers to identify a substantial number of microsatellites at less cost and effort than traditional approaches. Illumina is a noteworthy transcriptome sequencing technology that is currently used in SSR marker development. Although 454 pyrosequencing datasets can be used for SSR development, this type of sequencing is no longer supported. This review aims to present an overview of the next generation sequencing, with a focus on the efficient use of de novo transcriptome sequencing (RNA-Seq) and related tools for mining and development of microsatellites in plants.
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