Evidence map›Paper›PMID 29437954›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

T cell receptors for the HIV KK10 epitope from patients with differential immunologic control are functionally indistinguishable.

Alok V Joglekar, Zhe Liu, Jeffrey K Weber, Yong Ouyang, John D Jeppson, Won Jun Noh, Pedro A Lamothe-Molina, Huabiao Chen, Seung-Gu Kang, Michael T Bethune and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.5field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. A mutagenesis study of autoantigen optimization for potential T1D vaccine design.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  4. Article
  5. T cell antigen discovery.Nature methods · 2021
    Review
  6. CD8Nature reviews. Immunology · 2020
    Review
  7. Article
  8. In silico design and validation of high-affinity RNA aptamers targeting epithelial cellular adhesion molecule dimers.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  9. Immune Control of HIV.Journal of life sciences (Westlake Village, Calif.) · 2019
    Article
  10. Article
  11. Article
  12. Harnessing CD8Frontiers in immunology · 2019
    Review
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Alok V JoglekarDepartment of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125; alokvj@caltech.edu ruhongz@us.ibm.com baltimo@caltech.edu.
Zhe LiuDepartment of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125.
Jeffrey K WeberComputational Biology Center, IBM Thomas J. Watson Research Center, Yorktown Heights, NY 10598.
Yong OuyangDepartment of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125.
John D JeppsonDepartment of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125.
Won Jun NohDepartment of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125.
Pedro A Lamothe-MolinaRagon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology, and Harvard, Cambridge, MA 02139.
Huabiao ChenRagon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology, and Harvard, Cambridge, MA 02139.
Seung-Gu KangComputational Biology Center, IBM Thomas J. Watson Research Center, Yorktown Heights, NY 10598.
Michael T BethuneDepartment of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125.
Ruhong ZhouComputational Biology Center, IBM Thomas J. Watson Research Center, Yorktown Heights, NY 10598; alokvj@caltech.edu ruhongz@us.ibm.com baltimo@caltech.edu.
Bruce D WalkerRagon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology, and Harvard, Cambridge, MA 02139.
David BaltimoreDepartment of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125; alokvj@caltech.edu ruhongz@us.ibm.com baltimo@caltech.edu.
California Institute of Technology · USIBM Research - Thomas J. Watson Research Center · USRagon Institute of MGH, MIT and Harvard · USMassachusetts Institute of Technology · US

Funding

The impact of HIV viral diversity and cellular immunity on HIV pathogenesisP30AI060354 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI RAJESH T GANDHI · 2004 to 2026
$94.4M
Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MALLORY O JOHNSON · 1988 to 2026
$93.6M
Stem Cell and Transplantation BiologyU54DK106829 · NIDDK · FRED HUTCHINSON CANCER RESEARCH CENTER · PI DEREK L STIREWALT · 2015 to 2026
$9.1M
NIAID NIH HHS P30 AI027763NIAID NIH HHS P30 AI060354NIDDK NIH HHS U54 DK106829
6 · The paper itself

Abstract

HIV controllers (HCs) are individuals who can naturally control HIV infection, partially due to potent HIV-specific CD8+ T cell responses. Here, we examined the hypothesis that superior function of CD8+ T cells from HCs is encoded by their T cell receptors (TCRs). We compared the functional properties of immunodominant HIV-specific TCRs obtained from HLA-B*2705 HCs and chronic progressors (CPs) following expression in primary T cells. T cells transduced with TCRs from HCs and CPs showed equivalent induction of epitope-specific cytotoxicity, cytokine secretion, and antigen-binding properties. Transduced T cells comparably, albeit modestly, also suppressed HIV infection in vitro and in humanized mice. We also performed extensive molecular dynamics simulations that provided a structural basis for similarities in cytotoxicity and epitope cross-reactivity. These results demonstrate that the differential abilities of HIV-specific CD8+ T cells from HCs and CPs are not genetically encoded in the TCRs alone and must depend on additional factors.

Indexed as

CD8-Positive T-LymphocytesCloning, MolecularEpitopes, T-LymphocyteGene Expression RegulationHEK293 CellsHIV-1HIV InfectionsHLA-B27 AntigenHumansJurkat CellsReceptors, Antigen, T-CellEpitopes, T-LymphocyteHLA-B*27:05 antigenHLA-B27 AntigenReceptors, Antigen, T-CellHIV controllerskiller T cellsT cell receptors

Identifiers

PMID29437954
PMCPMC5828616
OpenAlexW2787064560

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.